RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 LENG1Q96BZ8 264 aaPredicted RBP8.34□□□□□ -1.07
USP49-205ENST00000448078 CSRNP1Q96S65 589 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 DNAJC25Q9H1X3 360 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 PPP4R2Q9NY27 417 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 TFCP2L1Q9NZI6 479 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 PPLO60437 1756 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 CRB1P82279 1406 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 SPATA31E1Q6ZUB1 1445 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 TNS1Q9HBL0 1735 aaKnown RBP8.34□□□□□ -1.07
USP49-205ENST00000448078 PRR36Q9H6K5 1346 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 ATP7BP35670 1465 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 PNMA6FA0A0J9YX94 578 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 DEAF1O75398 565 aaPredicted RBP8.33□□□□□ -1.08
USP49-205ENST00000448078 SELPP16109 830 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 CD68P34810 354 aaPredicted RBP8.33□□□□□ -1.08
USP49-205ENST00000448078 ATP2B2Q01814 1243 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 DOC2BQ14184 412 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 NRAPQ86VF7 1730 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 NXPE3Q969Y0 559 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 CCDC74AQ96AQ1 378 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 MRPL18Q9H0U6 180 aaKnown RBP8.33□□□□□ -1.08
USP49-205ENST00000448078 DLC1Q96QB1 1528 aa8.33□□□□□ -1.08
USP49-205ENST00000448078 BRD4O60885 1362 aaPredicted RBP8.33□□□□□ -1.08
USP49-205ENST00000448078 A0A1W2PP55 124 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 METTL12A8MUP2 240 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 IREB2P48200 963 aaKnown RBP8.32□□□□□ -1.08
USP49-205ENST00000448078 NLRP12P59046 1061 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 SETDB1Q15047 1291 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 DUOXA2Q1HG44 320 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 ACAD11Q709F0 780 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 TXNRD3Q86VQ6 643 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 KLHL23Q8NBE8 558 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 CHD4Q14839 1912 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 AATKQ6ZMQ8 1374 aa8.32□□□□□ -1.08
USP49-205ENST00000448078 WDR17Q8IZU2 1322 aa8.31□□□□□ -1.08
USP49-205ENST00000448078 GLB1P16278 677 aa8.31□□□□□ -1.08
USP49-205ENST00000448078 MBTPS1Q14703 1052 aa8.31□□□□□ -1.08
USP49-205ENST00000448078 PEAR1Q5VY43 1037 aaPredicted RBP8.31□□□□□ -1.08
USP49-205ENST00000448078 USP26Q9BXU7 913 aa8.31□□□□□ -1.08
USP49-205ENST00000448078 ADAM19Q9H013 955 aa8.31□□□□□ -1.08
USP49-205ENST00000448078 AKTIPQ9H8T0 292 aa8.31□□□□□ -1.08
USP49-205ENST00000448078 KNDC1Q76NI1 1749 aa8.31□□□□□ -1.08
USP49-205ENST00000448078 RGPD8O14715 1765 aaPredicted RBP8.3□□□□□ -1.08
USP49-205ENST00000448078 BCL9O00512 1426 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 CEP350Q5VT06 3117 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 TULP4Q9NRJ4 1543 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 NUP188Q5SRE5 1749 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 NFKBIEO00221 500 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 GSTM4Q03013 218 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 C19orf57Q0VDD7 668 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 SUZ12Q15022 739 aaKnown RBP8.3□□□□□ -1.08
USP49-205ENST00000448078 ALKBH8Q96BT7 664 aaKnown RBP8.3□□□□□ -1.08
USP49-205ENST00000448078 NRKQ7Z2Y5 1582 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 RREB1Q92766 1687 aa8.3□□□□□ -1.08
USP49-205ENST00000448078 USP19O94966 1318 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 IFT172Q9UG01 1749 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 A0A096LPE4 126 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 A0A1W2PPZ6 126 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 DLL1O00548 723 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 FURINP09958 794 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 ADAMTSL4Q6UY14 1074 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 SND1Q7KZF4 910 aaKnown RBP eCLIP8.29□□□□□ -1.08
USP49-205ENST00000448078 PTF1AQ7RTS3 328 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 HOMEZQ8IX15 550 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 GALNT11Q8NCW6 608 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 DDX54Q8TDD1 881 aaKnown RBP8.29□□□□□ -1.08
USP49-205ENST00000448078 EPS8L3Q8TE67 593 aaKnown RBP8.29□□□□□ -1.08
USP49-205ENST00000448078 WFDC12Q8WWY7 111 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 TP53INP1Q96A56 240 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 ACSBG1Q96GR2 724 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 BHLHE41Q9C0J9 482 aaPredicted RBP8.29□□□□□ -1.08
USP49-205ENST00000448078 GZF1Q9H116 711 aaPredicted RBP8.29□□□□□ -1.08
USP49-205ENST00000448078 SOX13Q9UN79 622 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 POLR3AO14802 1390 aaPredicted RBP8.29□□□□□ -1.08
USP49-205ENST00000448078 CAMTA1Q9Y6Y1 1673 aa8.29□□□□□ -1.08
USP49-205ENST00000448078 CCDC7Q96M83 1385 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 DDX3YO15523 660 aaKnown RBP8.28□□□□□ -1.08
USP49-205ENST00000448078 SART1O43290 800 aaKnown RBP8.28□□□□□ -1.08
USP49-205ENST00000448078 ALX3O95076 343 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 PROCP04070 461 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 ITGB2P05107 769 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 ADGRE1Q14246 886 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 SPRED3Q2MJR0 410 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 AGGF1Q8N302 714 aaeCLIP8.28□□□□□ -1.08
USP49-205ENST00000448078 FLAD1Q8NFF5 587 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 ZNF526Q8TF50 670 aaPredicted RBP8.28□□□□□ -1.08
USP49-205ENST00000448078 KLHDC7BQ96G42 594 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 ASB16Q96NS5 453 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 OSGEPQ9NPF4 335 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 CD2APQ9Y5K6 639 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 ABCA3Q99758 1704 aa8.28□□□□□ -1.08
USP49-205ENST00000448078 ALS2Q96Q42 1657 aa8.27□□□□□ -1.08
USP49-205ENST00000448078 COL5A2P05997 1499 aaPredicted RBP8.27□□□□□ -1.09
USP49-205ENST00000448078 TREHO43280 583 aa8.27□□□□□ -1.09
USP49-205ENST00000448078 IL2RBP14784 551 aa8.27□□□□□ -1.09
USP49-205ENST00000448078 PCDH1Q08174 1060 aa8.27□□□□□ -1.09
USP49-205ENST00000448078 DTHD1Q6ZMT9 781 aa8.27□□□□□ -1.09
USP49-205ENST00000448078 CCNJLQ8IV13 435 aa8.27□□□□□ -1.09
USP49-205ENST00000448078 C16orf71Q8IYS4 520 aaPredicted RBP8.27□□□□□ -1.09
USP49-205ENST00000448078 WNT8BQ93098 351 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms