RNA–Protein interactions for RNA: ENST00000435050.1

CLDN4-203, Transcript of claudin 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLDN4, Length 4,163 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-203ENST00000435050 TCHHQ07283 1943 aa13.95□□□□□ -0.18
CLDN4-203ENST00000435050 TPM3P06753 285 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 TCP10Q12799 353 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 TXNRD1Q16881 649 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 CPVLQ9H3G5 476 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 PNPLA7Q6ZV29 1317 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 SEMA3EO15041 775 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 TXLNAP40222 546 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 RILPL1Q5EBL4 403 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 FBXO33Q7Z6M2 555 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 FNBP4Q8N3X1 1017 aaPredicted RBP13.94□□□□□ -0.18
CLDN4-203ENST00000435050 LRRC4BQ9NT99 713 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 ATP8A2Q9NTI2 1148 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 NRBP1Q9UHY1 535 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 SPATA31A6Q5VVP1 1343 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 UQCRHLA0A096LP55 91 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 UQCRHP07919 91 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 SLC39A14Q15043 492 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 PNMA1Q8ND90 353 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 POLR3EQ9NVU0 708 aa13.94□□□□□ -0.18
CLDN4-203ENST00000435050 NOLC1Q14978 699 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLDN4-203ENST00000435050 ZNF827Q17R98 1081 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 RASGRP4Q8TDF6 673 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 SMARCE1Q969G3 411 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 TTF2Q9UNY4 1162 aaKnown RBP13.93□□□□□ -0.18
CLDN4-203ENST00000435050 SMTNL1A8MU46 457 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 ATP2B4P23634 1241 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 LRMPQ12912 555 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 CD209Q9NNX6 404 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 IFNKQ9P0W0 207 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 KIAA1468Q9P260 1216 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 PCDHB6Q9Y5E3 794 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 COL14A1Q05707 1796 aaKnown RBP13.93□□□□□ -0.18
CLDN4-203ENST00000435050 STX17P56962 302 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 DPCR1Q3MIW9 517 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 SGMS1Q86VZ5 419 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 RBM28Q9NW13 759 aaKnown RBP13.93□□□□□ -0.18
CLDN4-203ENST00000435050 PTPN21Q16825 1174 aa13.93□□□□□ -0.18
CLDN4-203ENST00000435050 SIPA1L3O60292 1781 aaPredicted RBP13.93□□□□□ -0.18
CLDN4-203ENST00000435050 MMP10P09238 476 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 NAPAP54920 295 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 HS1BP3Q53T59 392 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 KIAA0825Q8IV33 1275 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 FAM177A1Q8N128 213 aaPredicted RBP13.92□□□□□ -0.18
CLDN4-203ENST00000435050 UIMC1Q96RL1 719 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 DBNDD1Q9H9R9 158 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 MMP1P03956 469 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 ZNF75DP51815 510 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 GRAMD1CQ8IYS0 662 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 RIOK1Q9BRS2 568 aaKnown RBP13.92□□□□□ -0.18
CLDN4-203ENST00000435050 BRIP1Q9BX63 1249 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 FAM205CA6NFA0 338 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 WDHD1O75717 1129 aaPredicted RBP13.92□□□□□ -0.18
CLDN4-203ENST00000435050 EYA3Q99504 573 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 GPCPD1Q9NPB8 672 aa13.92□□□□□ -0.18
CLDN4-203ENST00000435050 PPEF1O14829 653 aaPredicted RBP13.91□□□□□ -0.18
CLDN4-203ENST00000435050 CMA1P23946 247 aa13.91□□□□□ -0.18
CLDN4-203ENST00000435050 SLC10A5Q5PT55 438 aa13.91□□□□□ -0.18
CLDN4-203ENST00000435050 SERTAD1Q9UHV2 236 aa13.91□□□□□ -0.18
CLDN4-203ENST00000435050 CUTAO60888 179 aa13.91□□□□□ -0.18
CLDN4-203ENST00000435050 PDLIM2Q96JY6 352 aa13.91□□□□□ -0.18
CLDN4-203ENST00000435050 GYS1P13807 737 aa13.91□□□□□ -0.18
CLDN4-203ENST00000435050 ILDR1Q86SU0 546 aaPredicted RBP13.91□□□□□ -0.18
CLDN4-203ENST00000435050 UBA5Q9GZZ9 404 aa13.91□□□□□ -0.18
CLDN4-203ENST00000435050 CAVIN2O95810 425 aa13.9□□□□□ -0.18
CLDN4-203ENST00000435050 SF3B2Q13435 895 aaKnown RBP13.9□□□□□ -0.18
CLDN4-203ENST00000435050 MXD3Q9BW11 206 aa13.9□□□□□ -0.18
CLDN4-203ENST00000435050 WDR19Q8NEZ3 1342 aa13.9□□□□□ -0.18
CLDN4-203ENST00000435050 PHLPP1O60346 1717 aa13.9□□□□□ -0.18
CLDN4-203ENST00000435050 PLCG2P16885 1265 aa13.9□□□□□ -0.18
CLDN4-203ENST00000435050 TTC38Q5R3I4 469 aa13.9□□□□□ -0.18
CLDN4-203ENST00000435050 TRMT44Q8IYL2 757 aaKnown RBP13.9□□□□□ -0.18
CLDN4-203ENST00000435050 LRRC47Q8N1G4 583 aaKnown RBP13.9□□□□□ -0.18
CLDN4-203ENST00000435050 BBOX1O75936 387 aa13.9□□□□□ -0.19
CLDN4-203ENST00000435050 SSBP05455 408 aaKnown RBP eCLIP13.9□□□□□ -0.19
CLDN4-203ENST00000435050 CDC25AP30304 524 aa13.9□□□□□ -0.19
CLDN4-203ENST00000435050 CPLX3Q8WVH0 158 aa13.9□□□□□ -0.19
CLDN4-203ENST00000435050 USP40Q9NVE5 1235 aa13.9□□□□□ -0.19
CLDN4-203ENST00000435050 FRMPD2Q68DX3 1309 aaPredicted RBP13.89□□□□□ -0.19
CLDN4-203ENST00000435050 XIRP1Q702N8 1843 aaKnown RBP13.89□□□□□ -0.19
CLDN4-203ENST00000435050 A0A1W2PQ27 194 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 A0A1W2PQ64 194 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 A0A1W2PQD8 194 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 SFPQP23246 707 aaKnown RBP eCLIP13.89□□□□□ -0.19
CLDN4-203ENST00000435050 CACNB3P54284 484 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 GRIK5Q16478 980 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 RNF26Q9BY78 433 aaPredicted RBP13.89□□□□□ -0.19
CLDN4-203ENST00000435050 HLA-DOAP06340 250 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 UBASH3AP57075 661 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 FMR1NBQ8N0W7 255 aaPredicted RBP13.89□□□□□ -0.19
CLDN4-203ENST00000435050 PCMTD1Q96MG8 357 aaPredicted RBP13.89□□□□□ -0.19
CLDN4-203ENST00000435050 SCG2P13521 617 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 UBA7P41226 1012 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 LONRF3Q496Y0 759 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 CDK5RAP3Q96JB5 506 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 MAPK8IP1Q9UQF2 711 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 TACC3Q9Y6A5 838 aa13.89□□□□□ -0.19
CLDN4-203ENST00000435050 OFD1O75665 1012 aa13.88□□□□□ -0.19
CLDN4-203ENST00000435050 PARP1P09874 1014 aaKnown RBP13.88□□□□□ -0.19
CLDN4-203ENST00000435050 SKILP12757 684 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms