RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TRIM74Q86UV6 250 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 TRIM73Q86UV7 250 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 MAGEB6Q8N7X4 407 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 DYDC1Q8WWB3 177 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 PLCH1Q4KWH8 1693 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 RANBP1P43487 201 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 SNW1Q13573 536 aaKnown RBP11.11□□□□□ -0.63
USP54-205ENST00000424265 TNIP1Q15025 636 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 ERCC6LQ2NKX8 1250 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 RIMBP2O15034 1052 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 SETDB1Q15047 1291 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 ENOX2Q16206 610 aaKnown RBP11.1□□□□□ -0.63
USP54-205ENST00000424265 PRR5LQ6MZQ0 368 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 THOC1Q96FV9 657 aaKnown RBP11.1□□□□□ -0.63
USP54-205ENST00000424265 CABP5Q9NP86 173 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 XIRP1Q702N8 1843 aaKnown RBP11.1□□□□□ -0.63
USP54-205ENST00000424265 RTL9Q8NET4 1388 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 UBE3CQ15386 1083 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 BIN2Q9UBW5 565 aaPredicted RBP11.1□□□□□ -0.63
USP54-205ENST00000424265 MINDY4BA8MYZ0 360 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 ANKRD65E5RJM6 399 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 CEP112Q8N8E3 955 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 ESR2Q92731 530 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 CABS1Q96KC9 395 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 PKD1L3Q7Z443 1732 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 CRYMQ14894 314 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 MTFR1LQ9H019 292 aa11.1□□□□□ -0.63
USP54-205ENST00000424265 MYO3BQ8WXR4 1341 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 PROCA1Q8NCQ7 364 aaPredicted RBP11.09□□□□□ -0.63
USP54-205ENST00000424265 SAAL1Q96ER3 474 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 SEC31BQ9NQW1 1179 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 RPAP1Q9BWH6 1393 aaPredicted RBP11.09□□□□□ -0.63
USP54-205ENST00000424265 AP1G2O75843 785 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 GYS1P13807 737 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 CCDC181Q5TID7 509 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 TSHZ3Q63HK5 1081 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 ANKRD23Q86SG2 305 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 CLEC17AQ6ZS10 378 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 TSHZ1Q6ZSZ6 1077 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 NEK1Q96PY6 1258 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 G3BP2Q9UN86 482 aaKnown RBP11.09□□□□□ -0.63
USP54-205ENST00000424265 MICALCLQ6ZW33 695 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 SIRT2Q8IXJ6 389 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 DSCC1Q9BVC3 393 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 BCS1LQ9Y276 419 aa11.09□□□□□ -0.63
USP54-205ENST00000424265 CCDC24Q8N4L8 307 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 MSL3Q8N5Y2 521 aaKnown RBP11.08□□□□□ -0.64
USP54-205ENST00000424265 STAG1Q8WVM7 1258 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 ADAM21Q9UKJ8 722 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 EPHA10Q5JZY3 1008 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 IQSEC3Q9UPP2 1182 aaPredicted RBP11.08□□□□□ -0.64
USP54-205ENST00000424265 RBM8AQ9Y5S9 174 aaKnown RBP11.08□□□□□ -0.64
USP54-205ENST00000424265 CACNA1FO60840 1977 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 ECM2O94769 699 aaPredicted RBP11.08□□□□□ -0.64
USP54-205ENST00000424265 PCP11498 1178 aaKnown RBP11.08□□□□□ -0.64
USP54-205ENST00000424265 KIF5BP33176 963 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 POTEAQ6S8J7 498 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 TAX1BP1Q86VP1 789 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 STK11IPQ8N1F8 1099 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 PUS3Q9BZE2 481 aaKnown RBP11.08□□□□□ -0.64
USP54-205ENST00000424265 PSD3Q9NYI0 1048 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 DBNLQ9UJU6 430 aaKnown RBP11.08□□□□□ -0.64
USP54-205ENST00000424265 COL18A1P39060 1754 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 SGSM2O43147 1006 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 RAD21O60216 631 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 PPFIA2O75334 1257 aa11.08□□□□□ -0.64
USP54-205ENST00000424265 WDHD1O75717 1129 aaPredicted RBP11.08□□□□□ -0.64
USP54-205ENST00000424265 MYLK4Q86YV6 388 aaPredicted RBP11.07□□□□□ -0.64
USP54-205ENST00000424265 TEKT1Q969V4 418 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 SUGT1Q9Y2Z0 365 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 ELP1O95163 1332 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 DLG5Q8TDM6 1919 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 HNRNPH1P31943 449 aaKnown RBP11.07□□□□□ -0.64
USP54-205ENST00000424265 ZAP70P43403 619 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 TNFAIP1Q13829 316 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 ZNF512BQ96KM6 892 aaPredicted RBP11.07□□□□□ -0.64
USP54-205ENST00000424265 MINPP1Q9UNW1 487 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 SASH1O94885 1247 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 MCM6Q14566 821 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 C11orf91Q3C1V1 193 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 RUFY1Q96T51 708 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 LIMCH1Q9UPQ0 1083 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 DDIT3P35638 169 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 ZC3H12AQ5D1E8 599 aaKnown RBP11.07□□□□□ -0.64
USP54-205ENST00000424265 PODNQ7Z5L7 613 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 CATIPQ7Z7H3 387 aa11.07□□□□□ -0.64
USP54-205ENST00000424265 COL23A1Q86Y22 540 aaPredicted RBP11.07□□□□□ -0.64
USP54-205ENST00000424265 MARCH6O60337 910 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 GNAQP50148 359 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 IKQ13123 557 aaPredicted RBP11.06□□□□□ -0.64
USP54-205ENST00000424265 HHATQ5VTY9 493 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 CCDC114Q96M63 670 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 SRRTQ9BXP5 876 aaKnown RBP11.06□□□□□ -0.64
USP54-205ENST00000424265 CAPN7Q9Y6W3 813 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 GOLGA6L7A0A1B0GV03 622 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 BECN2A8MW95 431 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 URI1O94763 535 aaPredicted RBP11.06□□□□□ -0.64
USP54-205ENST00000424265 CALM1P0DP23 149 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 CALM2P0DP24 149 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 CALM3P0DP25 149 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms