RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 TGFBRAP1Q8WUH2 860 aa12.6□□□□□ -0.39
DDX56-203ENST00000421223 KCNH3Q9ULD8 1083 aa12.6□□□□□ -0.39
DDX56-203ENST00000421223 U2AF2P26368 475 aaKnown RBP eCLIP12.59□□□□□ -0.394e-7■■■□□ 17.4
DDX56-203ENST00000421223 TOB1P50616 345 aaPredicted RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 PTPAQ15257 358 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 NOM1Q5C9Z4 860 aaKnown RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 MAPKAPK5Q8IW41 473 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 CTCFLQ8NI51 663 aaPredicted RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 C16orf45Q96MC5 204 aaPredicted RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 F8W031 263 aaPredicted RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 RIMBP2O15034 1052 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 POLR2DO15514 142 aaKnown RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 XBP1P17861 261 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 TFAP4Q01664 338 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 SEC23AQ15436 765 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 KRI1Q8N9T8 703 aaKnown RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 SLC44A5Q8NCS7 719 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 CACTINQ8WUQ7 758 aaKnown RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 ZNF592Q92610 1267 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 STX8Q9UNK0 236 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 ZNF174Q15697 407 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 USP49Q70CQ1 688 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 NBPF11Q86T75 865 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 PLA2G4DQ86XP0 818 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 SH3RF3Q8TEJ3 882 aaPredicted RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 MAP3K14Q99558 947 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 NOL10Q9BSC4 688 aaKnown RBP12.59□□□□□ -0.39
DDX56-203ENST00000421223 BRIP1Q9BX63 1249 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 IFNKQ9P0W0 207 aa12.59□□□□□ -0.39
DDX56-203ENST00000421223 VEGFAP15692 232 aaPredicted RBP12.58□□□□□ -0.4
DDX56-203ENST00000421223 PDE4BQ07343 736 aa12.58□□□□□ -0.4
DDX56-203ENST00000421223 ZNF827Q17R98 1081 aa12.58□□□□□ -0.4
DDX56-203ENST00000421223 KIAA1524Q8TCG1 905 aa12.58□□□□□ -0.4
DDX56-203ENST00000421223 CAVIN2O95810 425 aa12.58□□□□□ -0.4
DDX56-203ENST00000421223 HSPA1LP34931 641 aa12.58□□□□□ -0.4
DDX56-203ENST00000421223 EARS2Q5JPH6 523 aaKnown RBP12.58□□□□□ -0.4
DDX56-203ENST00000421223 PRR5LQ6MZQ0 368 aa12.58□□□□□ -0.4
DDX56-203ENST00000421223 TRMT1Q9NXH9 659 aaKnown RBP12.58□□□□□ -0.4
DDX56-203ENST00000421223 USP17L3A6NCW0 530 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 USP17L4A6NCW7 530 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 SERPINB2P05120 415 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 TPM3P06753 285 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 NLRP5P59047 1200 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 GRAPQ13588 217 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 USP17L1Q7RTZ2 530 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 GRAPLQ8TC17 118 aaPredicted RBP12.57□□□□□ -0.4
DDX56-203ENST00000421223 DDX60Q8IY21 1712 aaKnown RBP12.57□□□□□ -0.4
DDX56-203ENST00000421223 AFMP43652 599 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 GPSM2P81274 684 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 STAMQ92783 540 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 QTRT2Q9H974 415 aaKnown RBP12.57□□□□□ -0.4
DDX56-203ENST00000421223 PCDHA5Q9Y5H7 936 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 NRAPQ86VF7 1730 aa12.57□□□□□ -0.4
DDX56-203ENST00000421223 CUTAO60888 179 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 PPP6R2O75170 966 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 ATP1A3P13637 1013 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 NLRP12P59046 1061 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 RILPL1Q5EBL4 403 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 SPTY2D1Q68D10 685 aaPredicted RBP12.56□□□□□ -0.4
DDX56-203ENST00000421223 TMC6Q7Z403 805 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 CPVLQ9H3G5 476 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 SERTAD1Q9UHV2 236 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 SEMA3EO15041 775 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 SERPINC1P01008 464 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 TPM4P67936 248 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 TROAPQ12815 778 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 TPD52L1Q16890 204 aaPredicted RBP12.56□□□□□ -0.4
DDX56-203ENST00000421223 ZNF804AQ7Z570 1209 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 SRBD1Q8N5C6 995 aaKnown RBP12.56□□□□□ -0.4
DDX56-203ENST00000421223 GPKOWQ92917 476 aaPredicted RBP eCLIP12.56□□□□□ -0.45e-7■■■■■ 43.5
DDX56-203ENST00000421223 DHX58Q96C10 678 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 XPO4Q9C0E2 1151 aaKnown RBP12.56□□□□□ -0.4
DDX56-203ENST00000421223 KAT14Q9H8E8 782 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 ANAPC4Q9UJX5 808 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 BAZ2AQ9UIF9 1905 aaKnown RBP12.56□□□□□ -0.4
DDX56-203ENST00000421223 STK36Q9NRP7 1315 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 GOLGA8HP0CJ92 632 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 CASP1P29466 404 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 KRT2P35908 639 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 OLFM4Q6UX06 510 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 ZNF444Q8N0Y2 327 aaPredicted RBP12.56□□□□□ -0.4
DDX56-203ENST00000421223 CSRNP2Q9H175 543 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 ATP8A2Q9NTI2 1148 aa12.56□□□□□ -0.4
DDX56-203ENST00000421223 TRIM75PA6NK02 468 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 TSPY3P0CV98 308 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 TSPY8P0CW00 308 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 ST5P78524 1137 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 PKN1Q16512 942 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 RESP18Q5W5W9 173 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 KRBA2Q6ZNG9 492 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 PIK3AP1Q6ZUJ8 805 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 METTL16Q86W50 562 aaKnown RBP12.55□□□□□ -0.4
DDX56-203ENST00000421223 CREBRFQ8IUR6 639 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 AMOTL1Q8IY63 956 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 WDR66Q8TBY9 1149 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 SHISA4Q96DD7 197 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 EPSTI1Q96J88 318 aa12.55□□□□□ -0.4
DDX56-203ENST00000421223 RNF26Q9BY78 433 aaPredicted RBP12.55□□□□□ -0.4
DDX56-203ENST00000421223 FOXP1Q9H334 677 aaPredicted RBP12.55□□□□□ -0.4
DDX56-203ENST00000421223 VAT1LQ9HCJ6 419 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms