RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CEP120Q8N960 986 aa6.46□□□□□ -1.37
VPS13A-207ENST00000419472 KLHL6Q8WZ60 621 aa6.46□□□□□ -1.37
VPS13A-207ENST00000419472 TNKSO95271 1327 aa6.46□□□□□ -1.37
VPS13A-207ENST00000419472 HMGB1P1B2RPK0 211 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-207ENST00000419472 PLD2O14939 933 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 SELPP16109 830 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 RPIAP49247 311 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 LONRF2Q1L5Z9 754 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 GPR39O43194 453 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 F2P00734 622 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 ZSCAN20P17040 1043 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-207ENST00000419472 RNF144AP50876 292 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-207ENST00000419472 ADAMTSL4Q6UY14 1074 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 CNTD1Q8N815 330 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 JPH3Q8WXH2 748 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-207ENST00000419472 CDC6Q99741 560 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 TM9SF2Q99805 663 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 DHRS4Q9BTZ2 278 aa6.46□□□□□ -1.38
VPS13A-207ENST00000419472 POLMQ9NP87 494 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-207ENST00000419472 MAP3K20Q9NYL2 800 aaKnown RBP6.46□□□□□ -1.38
VPS13A-207ENST00000419472 GOLGA3Q08378 1498 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 MAPKBP1O60336 1514 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 DNAJC8O75937 253 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-207ENST00000419472 ATE1O95260 518 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 RHOQP17081 205 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 MSX1P28360 303 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 GPC1P35052 558 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 SFSWAPQ12872 951 aaKnown RBP6.45□□□□□ -1.38
VPS13A-207ENST00000419472 DGKHQ86XP1 1220 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 NXPE3Q969Y0 559 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 CHMP4CQ96CF2 233 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 RUBCNLQ9H714 662 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 IP6K2Q9UHH9 426 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 A0A1W2PQU0 124 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 TIMP2P16035 220 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 GRIA2P42262 883 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 RPL6Q02878 288 aaKnown RBP6.45□□□□□ -1.38
VPS13A-207ENST00000419472 INO80DQ53TQ3 878 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-207ENST00000419472 RAB44Q7Z6P3 723 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-207ENST00000419472 SKAP1Q86WV1 359 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 SLC7A3Q8WY07 619 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 BHLHE41Q9C0J9 482 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-207ENST00000419472 GJA3Q9Y6H8 435 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 WASF2Q9Y6W5 498 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 UHRF1BP1LA0JNW5 1464 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 HECW2Q9P2P5 1572 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 KIF21BO75037 1637 aa6.45□□□□□ -1.38
VPS13A-207ENST00000419472 KIAA0556O60303 1618 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 SPATA31C2B4DYI2 1134 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 WNT7AO00755 349 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 KPNA6O60684 536 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 PGRP06401 933 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 SKOR2Q2VWA4 1001 aaPredicted RBP6.44□□□□□ -1.38
VPS13A-207ENST00000419472 GRAMD1BQ3KR37 738 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 FNDC3BQ53EP0 1204 aaKnown RBP6.44□□□□□ -1.38
VPS13A-207ENST00000419472 WDR78Q5VTH9 848 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 NXNQ6DKJ4 435 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 OVOS1Q6IE37 1185 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 ERAP2Q6P179 960 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 LLGL2Q6P1M3 1020 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 POTEGQ6S5H5 508 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 NECAB2Q7Z6G3 386 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 SPICE1Q8N0Z3 855 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 TMEM40Q8WWA1 233 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 HTR3BO95264 441 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 CD53P19397 219 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 TRAPPC10P48553 1259 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 ATP11AP98196 1134 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 ZRSR2Q15696 482 aaKnown RBP6.44□□□□□ -1.38
VPS13A-207ENST00000419472 PASD1Q8IV76 773 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 SULF2Q8IWU5 870 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 VPS37AQ8NEZ2 397 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 DDX1Q92499 740 aaKnown RBP6.44□□□□□ -1.38
VPS13A-207ENST00000419472 PNMA5Q96PV4 448 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 SLC9A7Q96T83 725 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 ZNF700Q9H0M5 742 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 OBP2AQ9NY56 170 aa6.44□□□□□ -1.38
VPS13A-207ENST00000419472 SUCOQ9UBS9 1254 aaKnown RBP6.44□□□□□ -1.38
VPS13A-207ENST00000419472 FBXO9Q9UK97 447 aaPredicted RBP6.44□□□□□ -1.38
VPS13A-207ENST00000419472 MEIS3P2A8K0S8 358 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 ABLIM3O94929 683 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 PSAPP07602 524 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 NFKB1P19838 968 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 FGD2Q7Z6J4 655 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 ZFYVE1Q9HBF4 777 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 CYP8B1Q9UNU6 501 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 SPATA31D1Q6ZQQ2 1576 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 TNIKQ9UKE5 1360 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 IFIT2P09913 472 aaKnown RBP6.43□□□□□ -1.38
VPS13A-207ENST00000419472 ABCB5Q2M3G0 1257 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 GFOD2Q3B7J2 385 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 MTFR1LQ9H019 292 aa6.43□□□□□ -1.38
VPS13A-207ENST00000419472 ADCY10Q96PN6 1610 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 TRBV23-1A0A0A0MS06 115 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 NPHP1O15259 732 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 NME2P22392 152 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 POLR2BP30876 1174 aaKnown RBP6.42□□□□□ -1.38
VPS13A-207ENST00000419472 NEK4P51957 841 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 CCINQ13939 588 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 SV2CQ496J9 727 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms