RNA–Protein interactions for RNA: ENST00000395859.2

VCPKMT-201, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 1 (best) BASIC

Gene VCPKMT, Length 795 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-201ENST00000395859 LPIN2Q92539 896 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 WDR18Q9BV38 432 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 ATP11BQ9Y2G3 1177 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 USP17L5A8MUK1 530 aa17.16■□□□□ 0.34
VCPKMT-201ENST00000395859 MAP2K5Q13163 448 aa17.16■□□□□ 0.34
VCPKMT-201ENST00000395859 PLEKHH3Q7Z736 793 aa17.16■□□□□ 0.34
VCPKMT-201ENST00000395859 UHRF1Q96T88 793 aaPredicted RBP17.16■□□□□ 0.34
VCPKMT-201ENST00000395859 MYO9BQ13459 2157 aa17.16■□□□□ 0.34
VCPKMT-201ENST00000395859 FANCIQ9NVI1 1328 aa17.16■□□□□ 0.34
VCPKMT-201ENST00000395859 TRANK1O15050 2925 aa17.16■□□□□ 0.34
VCPKMT-201ENST00000395859 MUC6Q6W4X9 2439 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 HOXC6P09630 235 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 DNAJB2P25686 324 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 RFX5P48382 616 aaPredicted RBP17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 BACE1P56817 501 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 IRX3P78415 501 aaPredicted RBP17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 TRIM60Q495X7 471 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 AKNAD1Q5T1N1 836 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 SRCIN1Q9C0H9 1055 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 ZNF576Q9H609 170 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 THEGQ9P2T0 379 aa17.15■□□□□ 0.34
VCPKMT-201ENST00000395859 SLC5A1P13866 664 aa17.14■□□□□ 0.33
VCPKMT-201ENST00000395859 MTMR2Q13614 643 aa17.14■□□□□ 0.33
VCPKMT-201ENST00000395859 RNPC3Q96LT9 517 aaKnown RBP17.14■□□□□ 0.33
VCPKMT-201ENST00000395859 SIPA1L1O43166 1804 aa17.14■□□□□ 0.33
VCPKMT-201ENST00000395859 SEMA3EO15041 775 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 CNMDO75829 334 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 CYBAP13498 195 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 JAG1P78504 1218 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 MRPS5P82675 430 aaKnown RBP17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 PICALMQ13492 652 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 GJC2Q5T442 439 aaPredicted RBP17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 MFSD14CQ5VZR4 134 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 ATG9AQ7Z3C6 839 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 ZNF384Q8TF68 577 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 EDC3Q96F86 508 aaKnown RBP17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 C1QTNF1Q9BXJ1 281 aa17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 PRDM5Q9NQX1 630 aaPredicted RBP17.13■□□□□ 0.33
VCPKMT-201ENST00000395859 GPR75-ASB3A0A0A6YYF3 556 aa17.12■□□□□ 0.33
VCPKMT-201ENST00000395859 EYA2O00167 538 aa17.12■□□□□ 0.33
VCPKMT-201ENST00000395859 BTDP43251 543 aa17.12■□□□□ 0.33
VCPKMT-201ENST00000395859 AS3MTQ9HBK9 375 aa17.12■□□□□ 0.33
VCPKMT-201ENST00000395859 DENND2AQ9ULE3 1009 aa17.12■□□□□ 0.33
VCPKMT-201ENST00000395859 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.11■□□□□ 0.33
VCPKMT-201ENST00000395859 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.11■□□□□ 0.33
VCPKMT-201ENST00000395859 PHKA1P46020 1223 aa17.11■□□□□ 0.33
VCPKMT-201ENST00000395859 GTF3C2Q8WUA4 911 aaPredicted RBP17.11■□□□□ 0.33
VCPKMT-201ENST00000395859 MROH7-TTC4A0A0A0MT08 1334 aa17.11■□□□□ 0.33
VCPKMT-201ENST00000395859 PTPREP23469 700 aa17.1■□□□□ 0.33
VCPKMT-201ENST00000395859 CYP2C19P33261 490 aa17.1■□□□□ 0.33
VCPKMT-201ENST00000395859 ADGRE1Q14246 886 aa17.1■□□□□ 0.33
VCPKMT-201ENST00000395859 GRB14Q14449 540 aa17.1■□□□□ 0.33
VCPKMT-201ENST00000395859 NCBP3Q53F19 620 aaKnown RBP17.1■□□□□ 0.33
VCPKMT-201ENST00000395859 ARRDC4Q8NCT1 418 aa17.1■□□□□ 0.33
VCPKMT-201ENST00000395859 NPLOC4Q8TAT6 608 aa17.1■□□□□ 0.33
VCPKMT-201ENST00000395859 PDS5AQ29RF7 1337 aaKnown RBP17.1■□□□□ 0.33
VCPKMT-201ENST00000395859 SLC15A5A6NIM6 579 aa17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 C19orf81C9J6K1 198 aa17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 KIAA0355O15063 1070 aa17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 BMP1P13497 986 aa17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 TLE2Q04725 743 aa17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 EXOSC9Q06265 439 aaKnown RBP17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 ZGPATQ8N5A5 531 aaKnown RBP17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 TIFAQ96CG3 184 aa17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 LRFN3Q9BTN0 628 aa17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 GNL3LQ9NVN8 582 aaKnown RBP17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 TMOD4Q9NZQ9 345 aa17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 HERC5Q9UII4 1024 aaKnown RBP17.09■□□□□ 0.33
VCPKMT-201ENST00000395859 TCF20Q9UGU0 1960 aaKnown RBP17.08■□□□□ 0.33
VCPKMT-201ENST00000395859 SLC4A10Q6U841 1118 aa17.08■□□□□ 0.32
VCPKMT-201ENST00000395859 METTL16Q86W50 562 aaKnown RBP17.08■□□□□ 0.32
VCPKMT-201ENST00000395859 NECAB3Q96P71 396 aaPredicted RBP17.08■□□□□ 0.32
VCPKMT-201ENST00000395859 PAGR1Q9BTK6 254 aa17.08■□□□□ 0.32
VCPKMT-201ENST00000395859 DNAJC18Q9H819 358 aa17.08■□□□□ 0.32
VCPKMT-201ENST00000395859 EMILIN3Q9NT22 766 aa17.08■□□□□ 0.32
VCPKMT-201ENST00000395859 RABGAP1Q9Y3P9 1069 aa17.08■□□□□ 0.32
VCPKMT-201ENST00000395859 TACC3Q9Y6A5 838 aa17.08■□□□□ 0.32
VCPKMT-201ENST00000395859 MAP4K4O95819 1239 aaPredicted RBP17.07■□□□□ 0.32
VCPKMT-201ENST00000395859 CNGA1P29973 690 aa17.07■□□□□ 0.32
VCPKMT-201ENST00000395859 SHROOM1Q2M3G4 852 aaPredicted RBP17.07■□□□□ 0.32
VCPKMT-201ENST00000395859 RASIP1Q5U651 963 aa17.07■□□□□ 0.32
VCPKMT-201ENST00000395859 SLF2Q8IX21 1173 aa17.07■□□□□ 0.32
VCPKMT-201ENST00000395859 ZNF236Q9UL36 1845 aa17.07■□□□□ 0.32
VCPKMT-201ENST00000395859 USP17L10C9JJH3 530 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 KBTBD13C9JR72 458 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 ASNSP08243 561 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 ADCYAP1R1P41586 468 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 ATP2B2Q01814 1243 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 RASGRF1Q13972 1273 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 LRRC41Q15345 812 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 ATP2B3Q16720 1220 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 LBX2Q6XYB7 198 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 DZIP1Q86YF9 867 aaKnown RBP17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 PPM1EQ8WY54 764 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 GAS2L1Q99501 681 aaPredicted RBP17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 PBX4Q9BYU1 374 aa17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 PRKRIP1Q9H875 184 aaPredicted RBP17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 CXXC1Q9P0U4 656 aaPredicted RBP17.06■□□□□ 0.32
VCPKMT-201ENST00000395859 NDUFB9Q9Y6M9 179 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms