RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ZNF827Q17R98 1081 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 TEX11Q8IYF3 940 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 CPVLQ9H3G5 476 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 ZKSCAN5Q9Y2L8 839 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 WNK3Q9BYP7 1800 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 DDX60Q8IY21 1712 aaKnown RBP12.84□□□□□ -0.35
TCOF1-203ENST00000394269 YEATS4O95619 227 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 MMP10P09238 476 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 GOLGA8HP0CJ92 632 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 VEGFAP15692 232 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-203ENST00000394269 COL23A1Q86Y22 540 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-203ENST00000394269 FMR1NBQ8N0W7 255 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-203ENST00000394269 ENGASEQ8NFI3 743 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 TBC1D16Q8TBP0 767 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 ZC3H12CQ9C0D7 883 aaKnown RBP12.84□□□□□ -0.35
TCOF1-203ENST00000394269 TMX4Q9H1E5 349 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-203ENST00000394269 KAT14Q9H8E8 782 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 VAT1LQ9HCJ6 419 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 PCDHB6Q9Y5E3 794 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 MMP1P03956 469 aa12.83□□□□□ -0.36
TCOF1-203ENST00000394269 XBP1P17861 261 aa12.83□□□□□ -0.36
TCOF1-203ENST00000394269 GRIN1Q05586 938 aa12.83□□□□□ -0.36
TCOF1-203ENST00000394269 SLC27A3Q5K4L6 730 aa12.83□□□□□ -0.36
TCOF1-203ENST00000394269 POLRMTO00411 1230 aaKnown RBP12.83□□□□□ -0.36
TCOF1-203ENST00000394269 JMYQ8N9B5 988 aa12.83□□□□□ -0.36
TCOF1-203ENST00000394269 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.83□□□□□ -0.36
TCOF1-203ENST00000394269 BTAF1O14981 1849 aa12.83□□□□□ -0.36
TCOF1-203ENST00000394269 BBOX1O75936 387 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 EIF6P56537 245 aaKnown RBP12.82□□□□□ -0.36
TCOF1-203ENST00000394269 STX1AQ16623 288 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 HSP90AA4PQ58FG1 418 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 NOM1Q5C9Z4 860 aaKnown RBP12.82□□□□□ -0.36
TCOF1-203ENST00000394269 AOPEPQ8N6M6 819 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 ARPP21Q9UBL0 812 aaPredicted RBP12.82□□□□□ -0.36
TCOF1-203ENST00000394269 NRBP1Q9UHY1 535 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 ANAPC4Q9UJX5 808 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 LDHCP07864 332 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 ATP2B4P23634 1241 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 R3HCC1Q9Y3T6 440 aaKnown RBP12.82□□□□□ -0.36
TCOF1-203ENST00000394269 PCNTO95613 3336 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 PPEF1O14829 653 aaPredicted RBP12.82□□□□□ -0.36
TCOF1-203ENST00000394269 CTAGE5O15320 804 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 NLRP5P59047 1200 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 GSTO1P78417 241 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 TROAPQ12815 778 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 ZNF174Q15697 407 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 AXDND1Q5T1B0 1012 aaPredicted RBP12.82□□□□□ -0.36
TCOF1-203ENST00000394269 RASGRP2Q7LDG7 609 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 NBPF11Q86T75 865 aa12.82□□□□□ -0.36
TCOF1-203ENST00000394269 GPKOWQ92917 476 aaPredicted RBP eCLIP12.82□□□□□ -0.36
TCOF1-203ENST00000394269 MROH7-TTC4A0A0A0MT08 1334 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 ATP2B2Q01814 1243 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 SHC4Q6S5L8 630 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 SRBD1Q8N5C6 995 aaKnown RBP12.81□□□□□ -0.36
TCOF1-203ENST00000394269 ANO10Q9NW15 660 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 RBM5P52756 815 aaKnown RBP eCLIP12.81□□□□□ -0.36
TCOF1-203ENST00000394269 PNOCQ13519 176 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 DPCR1Q3MIW9 517 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 FILIP1Q7Z7B0 1213 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 HOMER1Q86YM7 354 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 STAG2Q8N3U4 1231 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 CNNM3Q8NE01 707 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 MYH7P12883 1935 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 PTGS1P23219 599 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 U2AF2P26368 475 aaKnown RBP eCLIP12.81□□□□□ -0.36
TCOF1-203ENST00000394269 TOB1P50616 345 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-203ENST00000394269 EARS2Q5JPH6 523 aaKnown RBP12.81□□□□□ -0.36
TCOF1-203ENST00000394269 C12orf60Q5U649 245 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 DPP8Q6V1X1 898 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-203ENST00000394269 CCDC186Q7Z3E2 898 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 CEP57L1Q8IYX8 460 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 PNMA1Q8ND90 353 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 DBNDD1Q9H9R9 158 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 KIAA1468Q9P260 1216 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 PARP3Q9Y6F1 533 aa12.81□□□□□ -0.36
TCOF1-203ENST00000394269 CMA1P23946 247 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 LRP5O75197 1615 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 A0A1W2PQ27 194 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 A0A1W2PQ64 194 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 A0A1W2PQD8 194 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 FOXN1O15353 648 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 SLURP2P0DP57 97 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 KCNA4P22459 653 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 NLGN1Q8N2Q7 840 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 KCNH3Q9ULD8 1083 aa12.8□□□□□ -0.36
TCOF1-203ENST00000394269 RGL2O15211 777 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 POLR2DO15514 142 aaKnown RBP12.79□□□□□ -0.36
TCOF1-203ENST00000394269 LONRF3Q496Y0 759 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 CRY2Q49AN0 593 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 PIK3AP1Q6ZUJ8 805 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 USP49Q70CQ1 688 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 GRAMD1CQ8IYS0 662 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 KRI1Q8N9T8 703 aaKnown RBP12.79□□□□□ -0.36
TCOF1-203ENST00000394269 RASGRP4Q8TDF6 673 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 KCNQ5Q9NR82 932 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 ATF5Q9Y2D1 282 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-203ENST00000394269 PTPAQ15257 358 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 HS1BP3Q53T59 392 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 MAP3K14Q99558 947 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 RNF26Q9BY78 433 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms