RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CACTINQ8WUQ7 758 aaKnown RBP11.07□□□□□ -0.64
COL6A3-204ENST00000392003 CELF1Q92879 486 aaKnown RBP11.07□□□□□ -0.64
COL6A3-204ENST00000392003 YY1AP1Q9H869 796 aa11.07□□□□□ -0.64
COL6A3-204ENST00000392003 BSDC1Q9NW68 430 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-204ENST00000392003 ARAP2Q8WZ64 1704 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 WDHD1O75717 1129 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-204ENST00000392003 RCAN1P53805 252 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 SF3B3Q15393 1217 aaKnown RBP11.06□□□□□ -0.64
COL6A3-204ENST00000392003 DPCR1Q3MIW9 517 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 IQCA1Q86XH1 822 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 KRI1Q8N9T8 703 aaKnown RBP11.06□□□□□ -0.64
COL6A3-204ENST00000392003 CNBD1Q8NA66 436 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 CNNM3Q8NE01 707 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 NKX2-3Q8TAU0 364 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 SDR42E1Q8WUS8 393 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 BPIFA3Q9BQP9 254 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 FAM217BQ9NTX9 383 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-204ENST00000392003 CEP131Q9UPN4 1083 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 FANCBQ8NB91 859 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 CCDC34Q96HJ3 373 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 C4AP0C0L4 1744 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 C4BP0C0L5 1744 aa11.06□□□□□ -0.64
COL6A3-204ENST00000392003 MMP1P03956 469 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 RILPL1Q5EBL4 403 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 C3orf67Q6ZVT6 689 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 CATIPQ7Z7H3 387 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 RPGRQ92834 1020 aaKnown RBP11.05□□□□□ -0.64
COL6A3-204ENST00000392003 C16orf45Q96MC5 204 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-204ENST00000392003 TFCP2L1Q9NZI6 479 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 WNK3Q9BYP7 1800 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.05□□□□□ -0.64
COL6A3-204ENST00000392003 BTBD18B2RXH4 712 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 TRIM37O94972 964 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 CCDC144BQ3MJ40 725 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 LRRC8AQ8IWT6 810 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 ANKRD2Q9GZV1 360 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 MINPP1Q9UNW1 487 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 SKILP12757 684 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 PTPAQ15257 358 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 ISM2Q6H9L7 571 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 CRACR2BQ8N4Y2 399 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-204ENST00000392003 FOXP1Q9H334 677 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-204ENST00000392003 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.05□□□□□ -0.64
COL6A3-204ENST00000392003 IMPACTQ9P2X3 320 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 KCNH3Q9ULD8 1083 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 KCNJ14Q9UNX9 436 aa11.05□□□□□ -0.64
COL6A3-204ENST00000392003 ZBTB12Q9Y330 459 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-204ENST00000392003 ERICH4A6NGS2 130 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 CLSTN1O94985 981 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 ATP2B1P20020 1258 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 RESP18Q5W5W9 173 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 TNKSO95271 1327 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 MROH7-TTC4A0A0A0MT08 1334 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 ZNF804BA4D1E1 1349 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 TULP2O00295 520 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 SEMA3EO15041 775 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 IFIT1BQ5T764 474 aaKnown RBP11.04□□□□□ -0.64
COL6A3-204ENST00000392003 SHC4Q6S5L8 630 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 GPATCH11Q8N954 259 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 CLIC6Q96NY7 704 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 MAP3K14Q99558 947 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 BRMS1Q9HCU9 246 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 IFNKQ9P0W0 207 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 ANAPC4Q9UJX5 808 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 JAG2Q9Y219 1238 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 CBFA2T2O43439 604 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 HIBADHP31937 336 aaKnown RBP11.04□□□□□ -0.64
COL6A3-204ENST00000392003 KRT27Q7Z3Y8 459 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 BCL2L12Q9HB09 334 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 HPSEQ9Y251 543 aa11.04□□□□□ -0.64
COL6A3-204ENST00000392003 IKBKBO14920 756 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 CALM1P0DP23 149 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 CALM2P0DP24 149 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 CALM3P0DP25 149 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 PCP11498 1178 aaKnown RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 BRIP1Q9BX63 1249 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 CRNKL1Q9BZJ0 848 aaKnown RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 NID2Q14112 1375 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 DOCK2Q92608 1830 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 DDX60Q8IY21 1712 aaKnown RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 TMC6Q7Z403 805 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 CCDC150Q8NCX0 1101 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 ZSCAN10Q96SZ4 725 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 NOL10Q9BSC4 688 aaKnown RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 RNF26Q9BY78 433 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 RBM28Q9NW13 759 aaKnown RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 TACC3Q9Y6A5 838 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 CHD4Q14839 1912 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 RIOK3O14730 519 aaKnown RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 SERPINC1P01008 464 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 LMOD1P29536 600 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 GUCY1A2P33402 732 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 GTF2F1P35269 517 aaKnown RBP eCLIP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 DYNLL1P63167 89 aaKnown RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 ST5P78524 1137 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 PNOCQ13519 176 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 KRBA2Q6ZNG9 492 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 CMTR1Q8N1G2 835 aaKnown RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 FAM84BQ96KN1 310 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-204ENST00000392003 XPO4Q9C0E2 1151 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms