RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ARHGEF1Q92888 912 aaKnown RBP15.43■□□□□ 0.06
CCDC3-202ENST00000378839 TIGD1Q96MW7 591 aa15.43■□□□□ 0.06
CCDC3-202ENST00000378839 BRIP1Q9BX63 1249 aa15.43■□□□□ 0.06
CCDC3-202ENST00000378839 RNF41Q9H4P4 317 aaPredicted RBP15.43■□□□□ 0.06
CCDC3-202ENST00000378839 AATFQ9NY61 560 aaKnown RBP eCLIP15.43■□□□□ 0.06
CCDC3-202ENST00000378839 MYH13Q9UKX3 1938 aa15.43■□□□□ 0.06
CCDC3-202ENST00000378839 VEGFAP15692 232 aaPredicted RBP15.43■□□□□ 0.06
CCDC3-202ENST00000378839 SART3Q15020 963 aaKnown RBP15.43■□□□□ 0.06
CCDC3-202ENST00000378839 NBPF5PQ86XG9 351 aaPredicted RBP15.43■□□□□ 0.06
CCDC3-202ENST00000378839 SETDB2Q96T68 719 aa15.43■□□□□ 0.06
CCDC3-202ENST00000378839 XPO4Q9C0E2 1151 aaKnown RBP15.43■□□□□ 0.06
CCDC3-202ENST00000378839 VPS54Q9P1Q0 977 aa15.43■□□□□ 0.06
CCDC3-202ENST00000378839 PDE4BQ07343 736 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 ESR2Q92731 530 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 PRIMPOLQ96LW4 560 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 PDCL3Q9H2J4 239 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 KCNH3Q9ULD8 1083 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 ERICH2A1L162 156 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 CUTAO60888 179 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 DEXIO95424 95 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 GTF2F1P35269 517 aaKnown RBP eCLIP15.42■□□□□ 0.06
CCDC3-202ENST00000378839 TROAPQ12815 778 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 GRIK5Q16478 980 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 SLC4A8Q2Y0W8 1093 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 C16orf45Q96MC5 204 aaPredicted RBP15.42■□□□□ 0.06
CCDC3-202ENST00000378839 MTA3Q9BTC8 594 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 IFNKQ9P0W0 207 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 RIOK3O14730 519 aaKnown RBP15.42■□□□□ 0.06
CCDC3-202ENST00000378839 PRR29P0C7W0 189 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 CHAF1AQ13111 956 aaPredicted RBP15.42■□□□□ 0.06
CCDC3-202ENST00000378839 FAM47AQ5JRC9 791 aa15.42■□□□□ 0.06
CCDC3-202ENST00000378839 NAT10Q9H0A0 1025 aaKnown RBP15.42■□□□□ 0.06
CCDC3-202ENST00000378839 FOXP1Q9H334 677 aaPredicted RBP15.42■□□□□ 0.06
CCDC3-202ENST00000378839 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.42■□□□□ 0.06
CCDC3-202ENST00000378839 NPY5RQ15761 445 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 PTPN21Q16825 1174 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 RC3H1Q5TC82 1133 aaKnown RBP15.41■□□□□ 0.06
CCDC3-202ENST00000378839 KRBA2Q6ZNG9 492 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 GRAMD1CQ8IYS0 662 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 DPF2Q92785 391 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 NLRP3Q96P20 1036 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 CABP5Q9NP86 173 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 DCP1AQ9NPI6 582 aaPredicted RBP15.41■□□□□ 0.06
CCDC3-202ENST00000378839 ATP2B1P20020 1258 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 HIBADHP31937 336 aaKnown RBP15.41■□□□□ 0.06
CCDC3-202ENST00000378839 TRIM22Q8IYM9 498 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 TMTC2Q8N394 836 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 KRI1Q8N9T8 703 aaKnown RBP15.41■□□□□ 0.06
CCDC3-202ENST00000378839 PCDHA5Q9Y5H7 936 aa15.41■□□□□ 0.06
CCDC3-202ENST00000378839 PTPREP23469 700 aa15.4■□□□□ 0.06
CCDC3-202ENST00000378839 LMOD1P29536 600 aaPredicted RBP15.4■□□□□ 0.06
CCDC3-202ENST00000378839 GPR101Q96P66 508 aaPredicted RBP15.4■□□□□ 0.06
CCDC3-202ENST00000378839 V9GY48 417 aaPredicted RBP15.4■□□□□ 0.06
CCDC3-202ENST00000378839 DLEC1Q9Y238 1755 aa15.4■□□□□ 0.06
CCDC3-202ENST00000378839 ARMCX5Q6P1M9 558 aa15.4■□□□□ 0.06
CCDC3-202ENST00000378839 WASF1Q92558 559 aa15.4■□□□□ 0.06
CCDC3-202ENST00000378839 CCNL1Q9UK58 526 aaPredicted RBP15.4■□□□□ 0.06
CCDC3-202ENST00000378839 RCAN1P53805 252 aa15.4■□□□□ 0.06
CCDC3-202ENST00000378839 PHF20Q9BVI0 1012 aa15.4■□□□□ 0.06
CCDC3-202ENST00000378839 KIAA1551Q9HCM1 1747 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 A0A087X0B3 334 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 SKILP12757 684 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 IFIT1BQ5T764 474 aaKnown RBP15.39■□□□□ 0.05
CCDC3-202ENST00000378839 FNBP4Q8N3X1 1017 aaPredicted RBP15.39■□□□□ 0.05
CCDC3-202ENST00000378839 SRBD1Q8N5C6 995 aaKnown RBP15.39■□□□□ 0.05
CCDC3-202ENST00000378839 JMYQ8N9B5 988 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 ZPR1O75312 459 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 NFIXQ14938 502 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 MED15Q96RN5 788 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 RNF26Q9BY78 433 aaPredicted RBP15.39■□□□□ 0.05
CCDC3-202ENST00000378839 MYH6P13533 1939 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 SBF2Q86WG5 1849 aa15.39■□□□□ 0.05
CCDC3-202ENST00000378839 NYXQ9GZU5 481 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 SERTAD1Q9UHV2 236 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 CCDC196A0A1B0GTZ2 297 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 POLR2DO15514 142 aaKnown RBP15.38■□□□□ 0.05
CCDC3-202ENST00000378839 SMC2O95347 1197 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 CNNM3Q8NE01 707 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 TNFRSF25Q93038 417 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 OSBPL5Q9H0X9 879 aaPredicted RBP15.38■□□□□ 0.05
CCDC3-202ENST00000378839 CSRNP2Q9H175 543 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 USP17L8P0C7I0 530 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 RILPL1Q5EBL4 403 aa15.38■□□□□ 0.05
CCDC3-202ENST00000378839 THSD7AQ9UPZ6 1657 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 SEMA3EO15041 775 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 PRPF3O43395 683 aaKnown RBP15.37■□□□□ 0.05
CCDC3-202ENST00000378839 SAFBQ15424 915 aaKnown RBP eCLIP15.37■□□□□ 0.05
CCDC3-202ENST00000378839 ZNF827Q17R98 1081 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 RCSD1Q6JBY9 416 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 TPTE2Q6XPS3 522 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 BCL11BQ9C0K0 894 aaPredicted RBP15.37■□□□□ 0.05
CCDC3-202ENST00000378839 NHSQ6T4R5 1651 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 TAF1LQ8IZX4 1826 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 RGL2O15211 777 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 ACTN4O43707 911 aaKnown RBP15.37■□□□□ 0.05
CCDC3-202ENST00000378839 FANCCQ00597 558 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 LRRC4BQ9NT99 713 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 MKRN1Q9UHC7 482 aaKnown RBP15.37■□□□□ 0.05
CCDC3-202ENST00000378839 MAN1B1Q9UKM7 699 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 RTCBQ9Y3I0 505 aaKnown RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms