RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 SRRTQ9BXP5 876 aaKnown RBP16.36■□□□□ 0.21
CD48-201ENST00000368045 AATFQ9NY61 560 aaKnown RBP eCLIP16.36■□□□□ 0.21
CD48-201ENST00000368045 SERTAD1Q9UHV2 236 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 ZNF652Q9Y2D9 606 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 THRAP3Q9Y2W1 955 aaKnown RBP16.36■□□□□ 0.21
CD48-201ENST00000368045 WNK3Q9BYP7 1800 aa16.35■□□□□ 0.21
CD48-201ENST00000368045 TRIM75PA6NK02 468 aa16.35■□□□□ 0.21
CD48-201ENST00000368045 ACTN4O43707 911 aaKnown RBP16.35■□□□□ 0.21
CD48-201ENST00000368045 UBE4AQ14139 1066 aa16.35■□□□□ 0.21
CD48-201ENST00000368045 TMED8Q6PL24 325 aaPredicted RBP16.35■□□□□ 0.21
CD48-201ENST00000368045 NUTM2AQ8IVF1 878 aaPredicted RBP16.35■□□□□ 0.21
CD48-201ENST00000368045 MIGA1Q8NAN2 632 aa16.35■□□□□ 0.21
CD48-201ENST00000368045 NUP133Q8WUM0 1156 aa16.35■□□□□ 0.21
CD48-201ENST00000368045 BCL11BQ9C0K0 894 aaPredicted RBP16.35■□□□□ 0.21
CD48-201ENST00000368045 NIP7Q9Y221 180 aaKnown RBP eCLIP16.35■□□□□ 0.21
CD48-201ENST00000368045 PCDHB6Q9Y5E3 794 aa16.35■□□□□ 0.21
CD48-201ENST00000368045 DOT1LQ8TEK3 1739 aa16.35■□□□□ 0.21
CD48-201ENST00000368045 TNKSO95271 1327 aa16.35■□□□□ 0.21
CD48-201ENST00000368045 COL22A1Q8NFW1 1626 aaPredicted RBP16.34■□□□□ 0.21
CD48-201ENST00000368045 SPDYE4A6NLX3 237 aa16.34■□□□□ 0.21
CD48-201ENST00000368045 PRPF3O43395 683 aaKnown RBP16.34■□□□□ 0.21
CD48-201ENST00000368045 ATP6V1AP38606 617 aa16.34■□□□□ 0.21
CD48-201ENST00000368045 PLCD1P51178 756 aa16.34■□□□□ 0.21
CD48-201ENST00000368045 CATIPQ7Z7H3 387 aa16.34■□□□□ 0.21
CD48-201ENST00000368045 HOMER1Q86YM7 354 aa16.34■□□□□ 0.21
CD48-201ENST00000368045 PRDM4Q9UKN5 801 aa16.34■□□□□ 0.21
CD48-201ENST00000368045 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.34■□□□□ 0.21
CD48-201ENST00000368045 LOC102724428A0A0B4J2F2 783 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 FOXN1O15353 648 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 FGRP09769 529 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 KRT2P35908 639 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 SIK1P57059 783 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 NR5A1Q13285 461 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 FERMT2Q96AC1 680 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 ZSCAN10Q96SZ4 725 aaPredicted RBP16.33■□□□□ 0.21
CD48-201ENST00000368045 RIOK1Q9BRS2 568 aaKnown RBP16.33■□□□□ 0.21
CD48-201ENST00000368045 PHF20Q9BVI0 1012 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 INTS13Q9NVM9 706 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 TAOK2Q9UL54 1235 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 NFE2L3Q9Y4A8 694 aa16.33■□□□□ 0.21
CD48-201ENST00000368045 PHLPP1O60346 1717 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 RGL2O15211 777 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 STX10O60499 249 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 DDAH1O94760 285 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 GRIN1Q05586 938 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 FUT2Q10981 343 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 ELF2Q15723 593 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 KMT5BQ4FZB7 885 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 SPECC1LQ69YQ0 1117 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 CLEC4GQ6UXB4 293 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 TMEM139Q8IV31 216 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 CSRNP2Q9H175 543 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 BRMS1Q9HCU9 246 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 RAI14Q9P0K7 980 aa16.33■□□□□ 0.2
CD48-201ENST00000368045 COL16A1Q07092 1604 aaPredicted RBP16.32■□□□□ 0.2
CD48-201ENST00000368045 MINDY4BA8MYZ0 360 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 TMEM232C9JQI7 657 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 SEMA3EO15041 775 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 PRR29P0C7W0 189 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 CDK11BP21127 795 aaKnown RBP16.32■□□□□ 0.2
CD48-201ENST00000368045 GABPB1Q06547 395 aaPredicted RBP16.32■□□□□ 0.2
CD48-201ENST00000368045 SF3B3Q15393 1217 aaKnown RBP16.32■□□□□ 0.2
CD48-201ENST00000368045 SPECC1Q5M775 1068 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 IQCA1Q86XH1 822 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 ANKRD18AQ8IVF6 992 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 REXO1L1PQ8IX06 675 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 ENAHQ8N8S7 591 aaPredicted RBP16.32■□□□□ 0.2
CD48-201ENST00000368045 OXER1Q8TDS5 423 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 CABP5Q9NP86 173 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 PRDM10Q9NQV6 1147 aa16.32■□□□□ 0.2
CD48-201ENST00000368045 PDS5AQ29RF7 1337 aaKnown RBP16.32■□□□□ 0.2
CD48-201ENST00000368045 SLFN14P0C7P3 912 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 FMR1Q06787 632 aaKnown RBP eCLIP16.31■□□□□ 0.2
CD48-201ENST00000368045 PKN1Q16512 942 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 CAVIN4Q5BKX8 364 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 TRIM65Q6PJ69 517 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 SMARCC1Q92922 1105 aaPredicted RBP16.31■□□□□ 0.2
CD48-201ENST00000368045 PKNOX2Q96KN3 472 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 BSDC1Q9NW68 430 aaPredicted RBP16.31■□□□□ 0.2
CD48-201ENST00000368045 NT5C2P49902 561 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 DDB1Q16531 1140 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 IFIT1BQ5T764 474 aaKnown RBP16.31■□□□□ 0.2
CD48-201ENST00000368045 FBXO38Q6PIJ6 1188 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 SH3RF1Q7Z6J0 888 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 ADGRA1Q86SQ6 560 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 KRT222Q8N1A0 295 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 CCDC82Q8N4S0 544 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 SDR42E1Q8WUS8 393 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 BAG1Q99933 345 aaPredicted RBP16.31■□□□□ 0.2
CD48-201ENST00000368045 PYM1Q9BRP8 204 aaKnown RBP16.31■□□□□ 0.2
CD48-201ENST00000368045 FAM53CQ9NYF3 392 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 ABCF2Q9UG63 623 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 DNAI1Q9UI46 699 aa16.31■□□□□ 0.2
CD48-201ENST00000368045 DUOX1Q9NRD9 1551 aa16.3■□□□□ 0.2
CD48-201ENST00000368045 TPM1P09493 284 aa16.3■□□□□ 0.2
CD48-201ENST00000368045 H2AFXP16104 143 aaPredicted RBP16.3■□□□□ 0.2
CD48-201ENST00000368045 ITPK1Q13572 414 aa16.3■□□□□ 0.2
CD48-201ENST00000368045 PPP2R2CQ9Y2T4 447 aa16.3■□□□□ 0.2
CD48-201ENST00000368045 SPATA31A1Q5TZJ5 1347 aa16.29■□□□□ 0.2
CD48-201ENST00000368045 A0A1B0GTH6 734 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms