RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 IRX3P78415 501 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 HOOK2Q96ED9 719 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 TRIM56Q9BRZ2 755 aaKnown RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 GOLGA6AQ9NYA3 693 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 EFCAB6Q5THR3 1501 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 PALM3A6NDB9 673 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-202ENST00000358808 ACTN4O43707 911 aaKnown RBP11.31□□□□□ -0.6
CLIP1-202ENST00000358808 TMTC4Q5T4D3 741 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 CDCA7Q9BWT1 371 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-202ENST00000358808 SPDYE2BA6NHP3 402 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 GRM8O00222 908 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 UFL1O94874 794 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 SPDYE6P0CI01 402 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 LMNTD2Q8IXW0 634 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 CNBD1Q8NA66 436 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 RHPN1Q8TCX5 695 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 CLCN1P35523 988 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 HAUS3Q68CZ6 603 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 ITM2BQ9Y287 266 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 RALGAPBQ86X10 1494 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 PRAG1Q86YV5 1406 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 ZNF174Q15697 407 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 KSR2Q6VAB6 950 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 CCDC186Q7Z3E2 898 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 UBE2Q2Q8WVN8 375 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 SLC5A4Q9NY91 659 aa11.31□□□□□ -0.6
CLIP1-202ENST00000358808 CCNT1O60563 726 aaKnown RBP11.3□□□□□ -0.6
CLIP1-202ENST00000358808 RXRAP19793 462 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 YARSP54577 528 aaKnown RBP11.3□□□□□ -0.6
CLIP1-202ENST00000358808 TTC22Q5TAA0 569 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 HAUS8Q9BT25 410 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 ASIC3Q9UHC3 531 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 DISP3Q9P2K9 1392 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 VWA3AA6NCI4 1184 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 P4HA1P13674 534 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 TTC31Q49AM3 519 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-202ENST00000358808 GBP6Q6ZN66 633 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 POMGNT1Q8WZA1 660 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 DCAF5Q96JK2 942 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 SMIM24O75264 130 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 GIGYF1O75420 1035 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-202ENST00000358808 CSPG5O95196 566 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 IQUBQ8NA54 791 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 ALDH1L1O75891 902 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 PDE4DQ08499 809 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 NXNQ6DKJ4 435 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 CPXCR1Q8N123 301 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 BANK1Q8NDB2 785 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 TRIM31Q9BZY9 425 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 NBPF3Q9H094 633 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 NPATQ14207 1427 aa11.3□□□□□ -0.6
CLIP1-202ENST00000358808 RNF113AO15541 343 aaKnown RBP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 XPAP23025 273 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 SND1Q7KZF4 910 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 LARGE2Q8N3Y3 721 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 KIF9Q9HAQ2 790 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 CTTNBP2NLQ9P2B4 639 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 IL16Q14005 1332 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 PRIMPOLQ96LW4 560 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 RILPQ96NA2 401 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 CCDC94Q9BW85 323 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 PPFIA1Q13136 1202 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 EIF4A2Q14240 407 aaKnown RBP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 METTL13Q8N6R0 699 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 NUCKS1Q9H1E3 243 aaKnown RBP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 VCX3AQ9NNX9 186 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 PPP1R12AO14974 1030 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 PPFIA2O75334 1257 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 GCP02774 474 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 GPR162Q16538 588 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 BMP2KLQ5H9B9 411 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 NSMFQ6X4W1 530 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 ARHGAP24Q8N264 748 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 DACT1Q9NYF0 836 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 BAG5Q9UL15 447 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 CAPN9O14815 690 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 JADE1Q6IE81 842 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 TRIM50Q86XT4 487 aa11.29□□□□□ -0.6
CLIP1-202ENST00000358808 BAG1Q99933 345 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-202ENST00000358808 FLT4P35916 1363 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 PFDN6O15212 129 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 GSTA1P08263 222 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 GSTA2P09210 222 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 PDE6AP16499 860 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 PLCD1P51178 756 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 APOBRQ0VD83 1088 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 NMIQ13287 307 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-202ENST00000358808 KRT81Q14533 505 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 USH1GQ495M9 461 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 ATP2A3Q93084 1043 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 NOLC1Q14978 699 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLIP1-202ENST00000358808 CNNM4Q6P4Q7 775 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 ZNF526Q8TF50 670 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-202ENST00000358808 SEPT8Q92599 483 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 TMX3Q96JJ7 454 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 BZW2Q9Y6E2 419 aaKnown RBP11.28□□□□□ -0.6
CLIP1-202ENST00000358808 SHROOM2Q13796 1616 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 S100BP04271 92 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-202ENST00000358808 IL1RL1Q01638 556 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms