RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 CCDC77Q9BR77 488 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 IFIH1Q9BYX4 1025 aaKnown RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 RAB17Q9H0T7 212 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 CLIC4Q9Y696 253 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 TSPY3P0CV98 308 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 TSPY8P0CW00 308 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 SLF2Q8IX21 1173 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 RASEFQ8IZ41 740 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 KCNF1Q9H3M0 494 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 MTUS1Q9ULD2 1270 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 ARHGEF28Q8N1W1 1705 aaKnown RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 BAG3O95817 575 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 SH3BGRP55822 239 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 NOSTRINQ8IVI9 506 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 GSDMAQ96QA5 445 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 ZBTB3Q9H5J0 574 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 ATP2B2Q01814 1243 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 NEDD9Q14511 834 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 VSTM4Q8IW00 320 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 SYCE1Q8N0S2 351 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 LINC00301Q8NCQ3 95 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 VCXQ9H320 206 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 ZDHHC9Q9Y397 364 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 USP37Q86T82 979 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 RAB3IPQ96QF0 476 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 OSBPL5Q9H0X9 879 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 ATP2A1O14983 1001 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 KIF1CO43896 1103 aaKnown RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 LUC7L3O95232 432 aaKnown RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 EPHB4P54760 987 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 PPP2R5EQ16537 467 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 DIS3L2Q8IYB7 885 aaKnown RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 KAT6BQ8WYB5 2073 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 PANX2Q96RD6 677 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 ASIC1P78348 528 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 CCDC152Q4G0S7 254 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 PROSER2Q86WR7 435 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 IP6K1Q92551 441 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 CEP83Q9Y592 693 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 EIF4A1P60842 406 aaKnown RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 IRX5P78411 483 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 FOXP1Q9H334 677 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 SH3TC1Q8TE82 1336 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 KCNJ18B7U540 433 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 ATP2C2O75185 946 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 HSPD1P10809 573 aaKnown RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 RESTQ13127 1097 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 KCNJ12Q14500 433 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 TNIP1Q15025 636 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 FAN1Q9Y2M0 1017 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 DEPDC5O75140 1603 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 SEC31AO94979 1220 aaKnown RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 STAMBPO95630 424 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 CTNNA1P35221 906 aaKnown RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 PDE4DQ08499 809 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 RBL2Q08999 1139 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 GKAP1Q5VSY0 366 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-203ENST00000343508 SPATA24Q86W54 205 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 LMNTD2Q8IXW0 634 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 MAGEB6Q8N7X4 407 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 NELFBQ8WX92 580 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 PSD3Q9NYI0 1048 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 ARHGEF40Q8TER5 1519 aa5.34□□□□□ -1.55
CSMD3-203ENST00000343508 MAGEB6P1A0A0J9YX57 407 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 EYA2O00167 538 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 SLF1Q9BQI6 1058 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 STX8Q9UNK0 236 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 RPAP1Q9BWH6 1393 aaPredicted RBP5.34□□□□□ -1.56
CSMD3-203ENST00000343508 TAF5LO75529 589 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 GNA14O95837 355 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 CLNS1AP54105 237 aaKnown RBP5.34□□□□□ -1.56
CSMD3-203ENST00000343508 CALCOCO2Q13137 446 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 KRT40Q6A162 431 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 ARHGEF25Q86VW2 580 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 STIM2Q9P246 746 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 HDAC9Q9UKV0 1011 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 IKBKGQ9Y6K9 419 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 MLH3Q9UHC1 1453 aa5.34□□□□□ -1.56
CSMD3-203ENST00000343508 GNGT1P63211 74 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 SPTY2D1Q68D10 685 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-203ENST00000343508 HEATR3Q7Z4Q2 680 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 CCDC65Q8IXS2 484 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 SUCLG2Q96I99 432 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 DBNDD2Q9BQY9 259 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 RETREG2Q8NC44 543 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 RGS22Q8NE09 1264 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 C6orf50Q9HD87 102 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.33□□□□□ -1.56
CSMD3-203ENST00000343508 B4E1Z4 1266 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 CYP2C19P33261 490 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 PHKBQ93100 1093 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 UBA5Q9GZZ9 404 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 PPANQ9NQ55 473 aaKnown RBP5.33□□□□□ -1.56
CSMD3-203ENST00000343508 NEBLO76041 1014 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 GSTO1P78417 241 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 RPAINQ86UA6 219 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 RNF10Q8N5U6 811 aaKnown RBP5.33□□□□□ -1.56
CSMD3-203ENST00000343508 DCAF5Q96JK2 942 aa5.33□□□□□ -1.56
CSMD3-203ENST00000343508 IQSEC3Q9UPP2 1182 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-203ENST00000343508 CDC42BPGQ6DT37 1551 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms