RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 KIAA1524Q8TCG1 905 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 LMBR1Q8WVP7 490 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 STMN2Q93045 179 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 FAM204AQ9H8W3 233 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 MYO1AQ9UBC5 1043 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 STXBP4Q6ZWJ1 553 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 MLKLQ8NB16 471 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 DDX21Q9NR30 783 aaKnown RBP eCLIP9.68□□□□□ -0.86
RTN3-202ENST00000339997 PCDHA5Q9Y5H7 936 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 SPDYE3A6NKU9 549 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 DDX39AO00148 427 aaKnown RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 CHL1O00533 1208 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 CCDC172P0C7W6 258 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 CALML3P27482 149 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 GCKP35557 465 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 MAP3K9P80192 1104 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 RASA3Q14644 834 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 RBM26Q5T8P6 1007 aaKnown RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 TMTC1Q8IUR5 882 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 ZCRB1Q8TBF4 217 aaKnown RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 TFCP2L1Q9NZI6 479 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 SBNO1A3KN83 1393 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 NSD2O96028 1365 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 EIF4E1BA6NMX2 242 aaKnown RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 ATP2A1O14983 1001 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 ATP1A3P13637 1013 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 HNRNPH2P55795 449 aaKnown RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 SARNPP82979 210 aaKnown RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 TTLL12Q14166 644 aaPredicted RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 NEDD9Q14511 834 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 FBXO38Q6PIJ6 1188 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 GPR161Q8N6U8 529 aaKnown RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 TTC14Q96N46 770 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 NOX5Q96PH1 765 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 AATFQ9NY61 560 aaKnown RBP eCLIP9.68□□□□□ -0.86
RTN3-202ENST00000339997 PPIP5K1Q6PFW1 1433 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 ERCC6L2Q5T890 1561 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 EYA2O00167 538 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 HLA-DOAP06340 250 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 KLHL30Q0D2K2 578 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 PPP2R5CQ13362 524 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 BIRC3Q13489 604 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 IFT20Q8IY31 132 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 KBTBD3Q8NAB2 608 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 PPFIBP2Q8ND30 876 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 RRP36Q96EU6 259 aaKnown RBP9.67□□□□□ -0.86
RTN3-202ENST00000339997 CTTNBP2NLQ9P2B4 639 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 NUP153P49790 1475 aaKnown RBP9.67□□□□□ -0.86
RTN3-202ENST00000339997 ITGA6P23229 1130 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 CTNNA1P35221 906 aaKnown RBP9.67□□□□□ -0.86
RTN3-202ENST00000339997 IL13P35225 146 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 IFT88Q13099 833 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 CCDC26Q8TAB7 109 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 RAB3IL1Q8TBN0 382 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 TLR7Q9NYK1 1049 aaKnown RBP9.67□□□□□ -0.86
RTN3-202ENST00000339997 PCDHB13Q9Y5F0 798 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 TNFAIP3P21580 790 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 CASP14P31944 242 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 CCDC105Q8IYK2 499 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 SLC35F6Q8N357 371 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 CPSF2Q9P2I0 782 aaKnown RBP9.67□□□□□ -0.86
RTN3-202ENST00000339997 RIPOR2Q9Y4F9 1068 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 KCNK3O14649 394 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 IFNB1P01574 187 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 FERP16591 822 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 TEX11Q8IYF3 940 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 PPP1R13BQ96KQ4 1090 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 NLRP3Q96P20 1036 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 IMPACTQ9P2X3 320 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 FEZ2Q9UHY8 353 aaPredicted RBP9.67□□□□□ -0.86
RTN3-202ENST00000339997 GINS2Q9Y248 185 aa9.67□□□□□ -0.86
RTN3-202ENST00000339997 CUTAO60888 179 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 KRT15P19012 456 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 ATP11AP98196 1134 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 INF2Q27J81 1249 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 ADALQ6DHV7 355 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 NGLY1Q96IV0 654 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 TRIM7Q9C029 511 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 LRRC27Q9C0I9 530 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 DEXIO95424 95 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 PDE1CQ14123 709 aaPredicted RBP9.66□□□□□ -0.86
RTN3-202ENST00000339997 LONRF2Q1L5Z9 754 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 SLFNL1Q499Z3 407 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 GKAP1Q5VSY0 366 aaPredicted RBP9.66□□□□□ -0.86
RTN3-202ENST00000339997 UTP11Q9Y3A2 253 aaKnown RBP9.66□□□□□ -0.86
RTN3-202ENST00000339997 RRP15Q9Y3B9 282 aaKnown RBP9.66□□□□□ -0.86
RTN3-202ENST00000339997 CLCN6P51797 869 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 PPFIA1Q13136 1202 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 SF3B2Q13435 895 aaKnown RBP9.66□□□□□ -0.86
RTN3-202ENST00000339997 MCUR1Q96AQ8 359 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 VEZTQ9HBM0 779 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.66□□□□□ -0.86
RTN3-202ENST00000339997 MYOM1P52179 1685 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 ADGBQ8N7X0 1667 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 ZNF532Q9HCE3 1301 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 RFC4P35249 363 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 GNAQP50148 359 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 GUCY2DQ02846 1103 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 SCRN1Q12765 414 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 TBC1D10BQ4KMP7 808 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms