RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LETM2Q2VYF4 491 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 RRAGBQ5VZM2 374 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 LRRC47Q8N1G4 583 aaKnown RBP11.54□□□□□ -0.56
USP54-201ENST00000339859 PKD2L1Q9P0L9 805 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 RASGRF1Q13972 1273 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 KLHL10Q6JEL2 608 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 ANKRD35Q8N283 1001 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 TLR7Q9NYK1 1049 aaKnown RBP11.54□□□□□ -0.56
USP54-201ENST00000339859 MAP2P11137 1827 aaKnown RBP11.54□□□□□ -0.56
USP54-201ENST00000339859 ALAS1P13196 640 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 NONOQ15233 471 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP54-201ENST00000339859 ZNF592Q92610 1267 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 ADCY9O60503 1353 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 FRMPD2Q68DX3 1309 aaPredicted RBP11.54□□□□□ -0.56
USP54-201ENST00000339859 CCNT1O60563 726 aaKnown RBP11.54□□□□□ -0.56
USP54-201ENST00000339859 SYKP43405 635 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 MRE11P49959 708 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 ASPRV1Q53RT3 343 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 FBXO11Q86XK2 927 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 ZEB2O60315 1214 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 TFIP11Q9UBB9 837 aaKnown RBP11.53□□□□□ -0.56
USP54-201ENST00000339859 A0A0D9SFI3 127 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 NTSR2O95665 410 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 KRT13P13646 458 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 FOXO4P98177 505 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 ATL3Q6DD88 541 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 M0R2C6 588 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 PDE4DQ08499 809 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 KRT26Q7Z3Y9 468 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 DPP9Q86TI2 863 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 VPS36Q86VN1 386 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 TBC1D16Q8TBP0 767 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 NEBLO76041 1014 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 ZNF654Q8IZM8 581 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 CAGE1Q8TC20 777 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 FERMT2Q96AC1 680 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 CCPG1Q9ULG6 757 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 TMEM232C9JQI7 657 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 LMNB1P20700 586 aa11.53□□□□□ -0.56
USP54-201ENST00000339859 RPS12P25398 132 aaKnown RBP11.53□□□□□ -0.56
USP54-201ENST00000339859 GPATCH4Q5T3I0 446 aaKnown RBP11.53□□□□□ -0.56
USP54-201ENST00000339859 GPBP1L1Q9HC44 474 aaPredicted RBP11.53□□□□□ -0.56
USP54-201ENST00000339859 COL14A1Q05707 1796 aaKnown RBP11.52□□□□□ -0.56
USP54-201ENST00000339859 PNMA1Q8ND90 353 aa11.52□□□□□ -0.56
USP54-201ENST00000339859 CNGA1P29973 690 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 STRIP1Q5VSL9 837 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 INTS4Q96HW7 963 aaKnown RBP11.52□□□□□ -0.57
USP54-201ENST00000339859 PALD1Q9ULE6 856 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 ARID4AP29374 1257 aaPredicted RBP11.52□□□□□ -0.57
USP54-201ENST00000339859 RILPL1Q5EBL4 403 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 SMIM5Q71RC9 77 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 CACNA2D4Q7Z3S7 1137 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 RGL2O15211 777 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 IGSF3O75054 1194 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 GDF11O95390 407 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 DNM2P50570 870 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 MTX1Q13505 466 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 PIK3AP1Q6ZUJ8 805 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 CDAN1Q8IWY9 1227 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 NWD1Q149M9 1564 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 MROH7-TTC4A0A0A0MT08 1334 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 ABCC12Q96J65 1359 aa11.52□□□□□ -0.57
USP54-201ENST00000339859 F13A1P00488 732 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 GYS1P13807 737 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 MTIF2P46199 727 aaKnown RBP11.51□□□□□ -0.57
USP54-201ENST00000339859 JAKMIP3Q5VZ66 844 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 SASH1O94885 1247 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 KIF4AO95239 1232 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 ASIC1P78348 528 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 PNMA8AQ86V59 439 aaPredicted RBP11.51□□□□□ -0.57
USP54-201ENST00000339859 TNKSO95271 1327 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 HSPA4P34932 840 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 CCT6AP40227 531 aaKnown RBP11.51□□□□□ -0.57
USP54-201ENST00000339859 PLCD1P51178 756 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 GALNT17Q6IS24 598 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 MIGA2Q7L4E1 593 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 FAM160B2Q86V87 743 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 LCORLQ8N3X6 602 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 IFT74Q96LB3 600 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 PIH1D3Q9NQM4 214 aaKnown RBP11.51□□□□□ -0.57
USP54-201ENST00000339859 FGAP02671 866 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 DIXDC1Q155Q3 683 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 STX1AQ16623 288 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 MICALL2Q8IY33 904 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 TCHPQ9BT92 498 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 MLXIPQ9HAP2 919 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 BCL9O00512 1426 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 SPTLC2O15270 562 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 CHMP2AO43633 222 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 MCM4P33991 863 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 UBE2HP62256 183 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 PANK2Q9BZ23 570 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 TM6SF1Q9BZW5 370 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 PXDNQ92626 1479 aa11.51□□□□□ -0.57
USP54-201ENST00000339859 ASNSP08243 561 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 SMTNP53814 917 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 MAP3K9P80192 1104 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 TCERG1LQ5VWI1 586 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 MRPS27Q92552 414 aaKnown RBP11.5□□□□□ -0.57
USP54-201ENST00000339859 ADD3Q9UEY8 706 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms