RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PPFIBP2Q8ND30 876 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 FOXD4L4Q8WXT5 416 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 TRIM11Q96F44 468 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 STAMBPL1Q96FJ0 436 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 THEGQ9P2T0 379 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 CEP131Q9UPN4 1083 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 IQSEC3Q9UPP2 1182 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 CNPY2Q9Y2B0 182 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 FAM135AQ9P2D6 1515 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 PER1O15534 1290 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 TIMM44O43615 452 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 PCK1P35558 622 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 GNPTABQ3T906 1256 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 GKAP1Q5VSY0 366 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 KDM7AQ6ZMT4 941 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 SLF2Q8IX21 1173 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC63Q8NA47 563 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 COG1Q8WTW3 980 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 LIMCH1Q9UPQ0 1083 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 MBD5Q9P267 1494 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 FRMD3A2A2Y4 597 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 CBX3Q13185 183 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 ANKRD1Q15327 319 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 TAF11Q15544 211 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 KLC3Q6P597 504 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 BAIAP2L1Q9UHR4 511 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 PPP2R2CQ9Y2T4 447 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 TMEM221A6NGB7 291 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 A6NHS1 94 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 THEMIS2Q5TEJ8 643 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 EMBQ6PCB8 327 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 DHRS1Q96LJ7 313 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 NAPGQ99747 312 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 IRF2BPLQ9H1B7 796 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 UNC13AQ9UPW8 1703 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 FAM135BQ49AJ0 1406 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 SLC4A2P04920 1241 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 VAV2P52735 878 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 PASD1Q8IV76 773 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 STAG2Q8N3U4 1231 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 RUFY2Q8WXA3 655 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 RAB3IPQ96QF0 476 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.63□□□□□ -1.672e-6■■■□□ 17.3
NEDD4-201ENST00000338963 RETREG1Q9H6L5 497 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 DCTPP1Q9H773 170 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 KAT14Q9H8E8 782 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 PPP1R1BQ9UD71 204 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 IKBKBO14920 756 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CD2BP2O95400 341 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ATP6V1G2O95670 118 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 FAM107AO95990 144 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 RPL17P18621 184 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CYP11B2P19099 503 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 MKRN4PQ13434 485 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SUZ12Q15022 739 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 GRAMD4Q6IC98 578 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 PHC3Q8NDX5 983 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ACMSDQ8TDX5 336 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 LRRC45Q96CN5 670 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 METTL14Q9HCE5 456 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ARHGEF10LQ9HCE6 1279 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 RRP7BPQ9NSQ0 103 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 WDR35Q9P2L0 1181 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 EME2A4GXA9 379 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 USO1O60763 962 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 FAM163BP0C2L3 166 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 FOSL1P15407 271 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 TUBA3CQ13748 450 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 TRIM29Q14134 588 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 GLE1Q53GS7 698 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 E4F1Q66K89 784 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 NLRP14Q86W24 1093 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SLX1AQ9BQ83 275 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 RBM42Q9BTD8 480 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 PHACTR1Q9C0D0 580 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 DNAJC25Q9H1X3 360 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 GPCPD1Q9NPB8 672 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 HYPKQ9NX55 129 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 HDAC6Q9UBN7 1215 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 USP27XA6NNY8 438 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 E9PMD0 336 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SH3BP5O60239 455 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CUTAO60888 179 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 MAP4K4O95819 1239 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SKIP12755 728 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SULT2A1Q06520 285 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 NCCRP1Q6ZVX7 275 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CENPKQ9BS16 269 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 DSEQ9UL01 958 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 PRPF3O43395 683 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ECM2O94769 699 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 PDE6BP35913 854 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 HSPA9P38646 679 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CCNG1P51959 295 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ITIH3Q06033 890 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 FOXD4Q12950 439 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 XRCC4Q13426 336 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SNX1Q13596 522 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC14Q49A88 953 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms