RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 CCDC144CPQ8IYA2 1237 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 ZNF287Q9HBT7 754 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 DDX49Q9Y6V7 483 aaKnown RBP18.12■□□□□ 0.49
LSM6-201ENST00000296581 STK36Q9NRP7 1315 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 TSPY2A6NKD2 308 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 IFNAR1P17181 557 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 COL4A5P29400 1685 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 FER1L6Q2WGJ9 1857 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 CCDC196A0A1B0GTZ2 297 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 USP48Q86UV5 1035 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 FANCBQ8NB91 859 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 MKNK2Q9HBH9 465 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 TCP11L1Q9NUJ3 509 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 SERPINA10Q9UK55 444 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 RASA1P20936 1047 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 TFAP4Q01664 338 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 DALRD3Q5D0E6 543 aaKnown RBP18.11■□□□□ 0.49
LSM6-201ENST00000296581 ANKS1AQ92625 1134 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 GDPD2Q9HCC8 539 aa18.11■□□□□ 0.49
LSM6-201ENST00000296581 DDX4Q9NQI0 724 aaKnown RBP18.11■□□□□ 0.49
LSM6-201ENST00000296581 DDAH1O94760 285 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 IARSP41252 1262 aaKnown RBP18.1■□□□□ 0.49
LSM6-201ENST00000296581 CDK8P49336 464 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 CCDC178Q5BJE1 867 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 RCSD1Q6JBY9 416 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 CATIPQ7Z7H3 387 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 SLC44A5Q8NCS7 719 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 C8orf76Q96K31 380 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 ZNF277Q9NRM2 450 aaPredicted RBP18.1■□□□□ 0.49
LSM6-201ENST00000296581 CD2APQ9Y5K6 639 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 NMT2O60551 498 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 FMNL1O95466 1100 aaPredicted RBP18.1■□□□□ 0.49
LSM6-201ENST00000296581 CALM1P0DP23 149 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 CALM2P0DP24 149 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 CALM3P0DP25 149 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 TROAPQ12815 778 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 DGKHQ86XP1 1220 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 LARGE2Q8N3Y3 721 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 FBXO18Q8NFZ0 1043 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 GPT2Q8TD30 523 aa18.1■□□□□ 0.49
LSM6-201ENST00000296581 MYO3BQ8WXR4 1341 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 MBD3O95983 291 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 FOSBP53539 338 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 KRT85P78386 507 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 PICALMQ13492 652 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 CSPP1Q1MSJ5 1256 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 TTC6Q86TZ1 520 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 ZNF444Q8N0Y2 327 aaPredicted RBP18.09■□□□□ 0.49
LSM6-201ENST00000296581 NUP133Q8WUM0 1156 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 PHKBQ93100 1093 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 IL17RBQ9NRM6 502 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 FAM173BQ6P4H8 233 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 NBPF11Q86T75 865 aa18.09■□□□□ 0.49
LSM6-201ENST00000296581 OSBPL5Q9H0X9 879 aaPredicted RBP18.09■□□□□ 0.49
LSM6-201ENST00000296581 NCLP19338 710 aaKnown RBP18.08■□□□□ 0.48
LSM6-201ENST00000296581 PTGER2P43116 358 aa18.08■□□□□ 0.48
LSM6-201ENST00000296581 GABPAQ06546 454 aa18.08■□□□□ 0.48
LSM6-201ENST00000296581 SSRP1Q08945 709 aaKnown RBP18.08■□□□□ 0.48
LSM6-201ENST00000296581 ALG1Q9BT22 464 aa18.08■□□□□ 0.48
LSM6-201ENST00000296581 FIBPO43427 364 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 NPM3O75607 178 aaKnown RBP18.07■□□□□ 0.48
LSM6-201ENST00000296581 VIL1P09327 827 aaKnown RBP18.07■□□□□ 0.48
LSM6-201ENST00000296581 TSPY3P0CV98 308 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 TSPY8P0CW00 308 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 RSBN1LQ6PCB5 846 aaPredicted RBP18.07■□□□□ 0.48
LSM6-201ENST00000296581 CRACR2BQ8N4Y2 399 aaPredicted RBP18.07■□□□□ 0.48
LSM6-201ENST00000296581 IDI2Q9BXS1 227 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 GZF1Q9H116 711 aaPredicted RBP18.07■□□□□ 0.48
LSM6-201ENST00000296581 RBM28Q9NW13 759 aaKnown RBP18.07■□□□□ 0.48
LSM6-201ENST00000296581 GUCY1B3Q02153 619 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 NEDD1Q8NHV4 660 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 SLC26A6Q9BXS9 759 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 PCDHAC2Q9Y5I4 1007 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 MYH8P13535 1937 aa18.07■□□□□ 0.48
LSM6-201ENST00000296581 GADD45BO75293 160 aaPredicted RBP18.06■□□□□ 0.48
LSM6-201ENST00000296581 NFIAQ12857 509 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 WASF1Q92558 559 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 GMLQ99445 158 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 PDCL3Q9H2J4 239 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 ZNRF3Q9ULT6 936 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 MYH6P13533 1939 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 ELP1O95163 1332 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 FUT2Q10981 343 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 OTUD7BQ6GQQ9 843 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 TRIM22Q8IYM9 498 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 AIFM3Q96NN9 605 aa18.06■□□□□ 0.48
LSM6-201ENST00000296581 SCAND2PQ9GZW5 306 aaPredicted RBP18.06■□□□□ 0.48
LSM6-201ENST00000296581 PLIN4Q96Q06 1357 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 PSDA5PKW4 1024 aaPredicted RBP18.05■□□□□ 0.48
LSM6-201ENST00000296581 PSMD14O00487 310 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 RBM5P52756 815 aaKnown RBP eCLIP18.05■□□□□ 0.48
LSM6-201ENST00000296581 NIM1KQ8IY84 436 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 RNF26Q9BY78 433 aaPredicted RBP18.05■□□□□ 0.48
LSM6-201ENST00000296581 UBE2HP62256 183 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 ATL3Q6DD88 541 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 MAP3K14Q99558 947 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 TAOK3Q9H2K8 898 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 KAT14Q9H8E8 782 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 GJB4Q9NTQ9 266 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 PPP1R1BQ9UD71 204 aaPredicted RBP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms