RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 DPCR1Q3MIW9 517 aa27.63■■■□□ 2.01
TRIM54-201ENST00000296098 MRFAP1L1Q96HT8 127 aa27.63■■■□□ 2.01
TRIM54-201ENST00000296098 BPIFA3Q9BQP9 254 aa27.63■■■□□ 2.01
TRIM54-201ENST00000296098 RBM28Q9NW13 759 aaKnown RBP27.63■■■□□ 2.01
TRIM54-201ENST00000296098 CALM1P0DP23 149 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 CALM2P0DP24 149 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 CALM3P0DP25 149 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 RILPL1Q5EBL4 403 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 LEMD3Q9Y2U8 911 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 DDAH1O94760 285 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 ADRA2BP18089 450 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 NLRP12P59046 1061 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 RBM6P78332 1123 aaKnown RBP27.62■■■□□ 2.01
TRIM54-201ENST00000296098 KRI1Q8N9T8 703 aaKnown RBP27.62■■■□□ 2.01
TRIM54-201ENST00000296098 CLIC6Q96NY7 704 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 JAG2Q9Y219 1238 aa27.62■■■□□ 2.01
TRIM54-201ENST00000296098 UBR3Q6ZT12 1888 aa27.61■■■□□ 2.01
TRIM54-201ENST00000296098 TOB1P50616 345 aaPredicted RBP27.61■■■□□ 2.01
TRIM54-201ENST00000296098 XDHP47989 1333 aa27.6■■■□□ 2.01
TRIM54-201ENST00000296098 AFF2P51816 1311 aa27.6■■■□□ 2.01
TRIM54-201ENST00000296098 XBP1P17861 261 aa27.6■■■□□ 2.01
TRIM54-201ENST00000296098 SBK1Q52WX2 424 aa27.6■■■□□ 2.01
TRIM54-201ENST00000296098 DNTTIP2Q5QJE6 756 aaKnown RBP27.6■■■□□ 2.01
TRIM54-201ENST00000296098 NRBP1Q9UHY1 535 aa27.6■■■□□ 2.01
TRIM54-201ENST00000296098 IGSF3O75054 1194 aa27.59■■■□□ 2.01
TRIM54-201ENST00000296098 EVX2Q03828 476 aa27.59■■■□□ 2.01
TRIM54-201ENST00000296098 FUT2Q10981 343 aa27.59■■■□□ 2.01
TRIM54-201ENST00000296098 TROAPQ12815 778 aa27.59■■■□□ 2.01
TRIM54-201ENST00000296098 NR5A1Q13285 461 aa27.59■■■□□ 2.01
TRIM54-201ENST00000296098 WDR66Q8TBY9 1149 aa27.59■■■□□ 2.01
TRIM54-201ENST00000296098 LRRC4BQ9NT99 713 aa27.59■■■□□ 2.01
TRIM54-201ENST00000296098 BIN1O00499 593 aa27.58■■■□□ 2.01
TRIM54-201ENST00000296098 PRPF3O43395 683 aaKnown RBP27.58■■■□□ 2.01
TRIM54-201ENST00000296098 BCL11BQ9C0K0 894 aaPredicted RBP27.58■■■□□ 2.01
TRIM54-201ENST00000296098 ONECUT3O60422 494 aaPredicted RBP27.58■■■□□ 2.01
TRIM54-201ENST00000296098 PLEKHA8P1O95397 391 aa27.58■■■□□ 2.01
TRIM54-201ENST00000296098 CYP2D6P10635 497 aa27.58■■■□□ 2.01
TRIM54-201ENST00000296098 SEPT12Q8IYM1 358 aa27.58■■■□□ 2.01
TRIM54-201ENST00000296098 LDHBP07195 334 aaKnown RBP27.57■■■□□ 2
TRIM54-201ENST00000296098 PDE4BQ07343 736 aa27.57■■■□□ 2
TRIM54-201ENST00000296098 PKN1Q16512 942 aa27.57■■■□□ 2
TRIM54-201ENST00000296098 PRR5LQ6MZQ0 368 aa27.57■■■□□ 2
TRIM54-201ENST00000296098 SLC51AQ86UW1 340 aa27.57■■■□□ 2
TRIM54-201ENST00000296098 OXER1Q8TDS5 423 aa27.57■■■□□ 2
TRIM54-201ENST00000296098 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.57■■■□□ 2
TRIM54-201ENST00000296098 ZNF804AQ7Z570 1209 aa27.57■■■□□ 2
TRIM54-201ENST00000296098 TUBE1Q9UJT0 475 aa27.57■■■□□ 2
TRIM54-201ENST00000296098 KCNH3Q9ULD8 1083 aa27.57■■■□□ 2
TRIM54-201ENST00000296098 TMTC3Q6ZXV5 915 aa27.56■■■□□ 2
TRIM54-201ENST00000296098 RPGRQ92834 1020 aaKnown RBP27.56■■■□□ 2
TRIM54-201ENST00000296098 VPS54Q9P1Q0 977 aa27.56■■■□□ 2
TRIM54-201ENST00000296098 FBXO2Q9UK22 296 aaPredicted RBP27.56■■■□□ 2
TRIM54-201ENST00000296098 CEP131Q9UPN4 1083 aa27.56■■■□□ 2
TRIM54-201ENST00000296098 SHISA4Q96DD7 197 aa27.55■■■□□ 2
TRIM54-201ENST00000296098 PHF20Q9BVI0 1012 aa27.55■■■□□ 2
TRIM54-201ENST00000296098 PTPREP23469 700 aa27.55■■■□□ 2
TRIM54-201ENST00000296098 CCDC144BQ3MJ40 725 aa27.55■■■□□ 2
TRIM54-201ENST00000296098 FAM47AQ5JRC9 791 aa27.55■■■□□ 2
TRIM54-201ENST00000296098 KRBA2Q6ZNG9 492 aa27.55■■■□□ 2
TRIM54-201ENST00000296098 MCM9Q9NXL9 1143 aa27.55■■■□□ 2
TRIM54-201ENST00000296098 PCDHB6Q9Y5E3 794 aa27.55■■■□□ 2
TRIM54-201ENST00000296098 NAV1Q8NEY1 1877 aa27.54■■■□□ 2
TRIM54-201ENST00000296098 NMT2O60551 498 aa27.54■■■□□ 2
TRIM54-201ENST00000296098 KRT2P35908 639 aa27.54■■■□□ 2
TRIM54-201ENST00000296098 GSTO1P78417 241 aa27.54■■■□□ 2
TRIM54-201ENST00000296098 LRMPQ12912 555 aa27.54■■■□□ 2
TRIM54-201ENST00000296098 C15orf52Q6ZUT6 534 aaKnown RBP27.54■■■□□ 2
TRIM54-201ENST00000296098 CTCFLQ8NI51 663 aaPredicted RBP27.54■■■□□ 2
TRIM54-201ENST00000296098 TRPC5Q9UL62 973 aaPredicted RBP27.54■■■□□ 2
TRIM54-201ENST00000296098 V9GY48 417 aaPredicted RBP27.54■■■□□ 2
TRIM54-201ENST00000296098 CNTNAP5Q8WYK1 1306 aa27.54■■■□□ 2
TRIM54-201ENST00000296098 TPM4P67936 248 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 CERKQ8TCT0 537 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 CABP5Q9NP86 173 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 FAM13BQ9NYF5 915 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 UQCRHLA0A096LP55 91 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 TSPY2A6NKD2 308 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 UQCRHP07919 91 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 PNOCQ13519 176 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 CNNM3Q8NE01 707 aa27.53■■■□□ 2
TRIM54-201ENST00000296098 hCG_1642624A0A1W2PR95 340 aa27.52■■■□□ 2
TRIM54-201ENST00000296098 USP17L8P0C7I0 530 aa27.52■■■□□ 2
TRIM54-201ENST00000296098 USP5P45974 858 aa27.52■■■□□ 2
TRIM54-201ENST00000296098 ST5P78524 1137 aa27.52■■■□□ 2
TRIM54-201ENST00000296098 LONRF3Q496Y0 759 aa27.52■■■□□ 2
TRIM54-201ENST00000296098 METTL16Q86W50 562 aaKnown RBP27.52■■■□□ 2
TRIM54-201ENST00000296098 SMTNL1A8MU46 457 aa27.51■■■□□ 2
TRIM54-201ENST00000296098 CRY2Q49AN0 593 aa27.51■■■□□ 2
TRIM54-201ENST00000296098 ZNF579Q8NAF0 562 aaKnown RBP27.51■■■□□ 2
TRIM54-201ENST00000296098 BRMS1Q9HCU9 246 aa27.51■■■□□ 2
TRIM54-201ENST00000296098 ROBO3Q96MS0 1386 aa27.51■■□□□ 1.99
TRIM54-201ENST00000296098 GYS1P13807 737 aa27.51■■□□□ 1.99
TRIM54-201ENST00000296098 NT5C2P49902 561 aa27.51■■□□□ 1.99
TRIM54-201ENST00000296098 ELOA2Q8IYF1 753 aaPredicted RBP27.51■■□□□ 1.99
TRIM54-201ENST00000296098 CACTINQ8WUQ7 758 aaKnown RBP27.51■■□□□ 1.99
TRIM54-201ENST00000296098 MKRN1Q9UHC7 482 aaKnown RBP27.51■■□□□ 1.99
TRIM54-201ENST00000296098 GPSM2P81274 684 aa27.5■■□□□ 1.99
TRIM54-201ENST00000296098 SPECC1Q5M775 1068 aa27.5■■□□□ 1.99
TRIM54-201ENST00000296098 C12orf60Q5U649 245 aa27.5■■□□□ 1.99
TRIM54-201ENST00000296098 SH3RF3Q8TEJ3 882 aaPredicted RBP27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 208.3 ms