RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 NMT2O60551 498 aa26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 RXRAP19793 462 aa26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 RPS12P25398 132 aaKnown RBP26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 MMP14P50281 582 aa26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 LARP1BQ659C4 914 aaKnown RBP26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 DDX11Q96FC9 970 aa26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 EHD4Q9H223 541 aa26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 DHX36Q9H2U1 1008 aaKnown RBP26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 FAM217BQ9NTX9 383 aaPredicted RBP26.78■■□□□ 1.88
SMARCB1-201ENST00000263121 ENTPD3O75355 529 aa26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 HLA-DOAP06340 250 aa26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 CDC27P30260 824 aa26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 NBR1Q14596 966 aa26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 ZBED3Q96IU2 234 aaPredicted RBP26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 GBP4Q96PP9 640 aa26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 IL17RBQ9NRM6 502 aa26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 SERPINB13Q9UIV8 391 aa26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 MTMR6Q9Y217 621 aa26.77■■□□□ 1.88
SMARCB1-201ENST00000263121 TSPY3P0CV98 308 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 TSPY8P0CW00 308 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 ZSCAN22P10073 491 aaPredicted RBP26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 EIF6P56537 245 aaKnown RBP26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 CCDC178Q5BJE1 867 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 RCSD1Q6JBY9 416 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 ANKS1AQ92625 1134 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 SWAP70Q9UH65 585 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 ATRNL1Q5VV63 1379 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 DICER1Q9UPY3 1922 aaKnown RBP26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 CPLX1O14810 134 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 MCM4P33991 863 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 ADD1P35611 737 aaKnown RBP26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 TCP10Q12799 353 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 ARHGAP27Q6ZUM4 889 aa26.76■■□□□ 1.87
SMARCB1-201ENST00000263121 FDPSP14324 419 aaKnown RBP26.75■■□□□ 1.87
SMARCB1-201ENST00000263121 FOXD4L5Q5VV16 416 aaPredicted RBP26.75■■□□□ 1.87
SMARCB1-201ENST00000263121 SH3BP5LQ7L8J4 393 aa26.75■■□□□ 1.87
SMARCB1-201ENST00000263121 DGKHQ86XP1 1220 aa26.75■■□□□ 1.87
SMARCB1-201ENST00000263121 FAM184AQ8NB25 1140 aa26.75■■□□□ 1.87
SMARCB1-201ENST00000263121 NEDD1Q8NHV4 660 aa26.75■■□□□ 1.87
SMARCB1-201ENST00000263121 FOXD4L4Q8WXT5 416 aaPredicted RBP26.75■■□□□ 1.87
SMARCB1-201ENST00000263121 KIF3AQ9Y496 699 aa26.75■■□□□ 1.87
SMARCB1-201ENST00000263121 DDTLA6NHG4 134 aaPredicted RBP26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 BAG4O95429 457 aaKnown RBP26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 ZNF280AP59817 542 aaPredicted RBP26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 NTRK3Q16288 839 aa26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 SPDYE2Q495Y8 402 aa26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 CCDC144CPQ8IYA2 1237 aa26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 TMOD2Q9NZR1 351 aa26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 ZNF70Q9UC06 446 aaPredicted RBP26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 TAOK2Q9UL54 1235 aa26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 PLIN4Q96Q06 1357 aa26.74■■□□□ 1.87
SMARCB1-201ENST00000263121 CDKL5O76039 1030 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 DDAH1O94760 285 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 LMNB1P20700 586 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 RTN1Q16799 776 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 CATIPQ7Z7H3 387 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 MYH8P13535 1937 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 TROAPQ12815 778 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 CPLX2Q6PUV4 134 aaKnown RBP26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 FANCBQ8NB91 859 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 DPF2Q92785 391 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 MYOZ2Q9NPC6 264 aa26.73■■□□□ 1.87
SMARCB1-201ENST00000263121 ZNF541Q9H0D2 1346 aa26.72■■□□□ 1.87
SMARCB1-201ENST00000263121 SBF1O95248 1867 aa26.72■■□□□ 1.87
SMARCB1-201ENST00000263121 VPS37CA5D8V6 355 aaPredicted RBP26.72■■□□□ 1.87
SMARCB1-201ENST00000263121 F13A1P00488 732 aa26.72■■□□□ 1.87
SMARCB1-201ENST00000263121 SHMT1P34896 483 aa26.72■■□□□ 1.87
SMARCB1-201ENST00000263121 PPP2R5BQ15173 497 aa26.72■■□□□ 1.87
SMARCB1-201ENST00000263121 PI4KBQ9UBF8 816 aa26.72■■□□□ 1.87
SMARCB1-201ENST00000263121 SHTN1A0MZ66 631 aa26.71■■□□□ 1.87
SMARCB1-201ENST00000263121 CLRN2A0PK11 232 aa26.71■■□□□ 1.87
SMARCB1-201ENST00000263121 CALM1P0DP23 149 aa26.71■■□□□ 1.87
SMARCB1-201ENST00000263121 CALM2P0DP24 149 aa26.71■■□□□ 1.87
SMARCB1-201ENST00000263121 CALM3P0DP25 149 aa26.71■■□□□ 1.87
SMARCB1-201ENST00000263121 GMPSP49915 693 aaPredicted RBP26.71■■□□□ 1.87
SMARCB1-201ENST00000263121 FKBP1CQ5VVH2 108 aa26.71■■□□□ 1.87
SMARCB1-201ENST00000263121 NUP133Q8WUM0 1156 aa26.71■■□□□ 1.87
SMARCB1-201ENST00000263121 CCDC196A0A1B0GTZ2 297 aa26.7■■□□□ 1.87
SMARCB1-201ENST00000263121 PPFIA3O75145 1194 aa26.7■■□□□ 1.87
SMARCB1-201ENST00000263121 CDC37L1Q7L3B6 337 aa26.7■■□□□ 1.87
SMARCB1-201ENST00000263121 METTL16Q86W50 562 aaKnown RBP26.7■■□□□ 1.87
SMARCB1-201ENST00000263121 DNAJC18Q9H819 358 aa26.7■■□□□ 1.87
SMARCB1-201ENST00000263121 ORC3Q9UBD5 711 aaPredicted RBP26.7■■□□□ 1.87
SMARCB1-201ENST00000263121 WNT10BO00744 389 aa26.7■■□□□ 1.86
SMARCB1-201ENST00000263121 IFNAR1P17181 557 aa26.7■■□□□ 1.86
SMARCB1-201ENST00000263121 NOVP48745 357 aa26.7■■□□□ 1.86
SMARCB1-201ENST00000263121 ZSCAN29Q8IWY8 852 aaPredicted RBP26.7■■□□□ 1.86
SMARCB1-201ENST00000263121 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.7■■□□□ 1.86
SMARCB1-201ENST00000263121 GREB1LQ9C091 1923 aaPredicted RBP26.69■■□□□ 1.86
SMARCB1-201ENST00000263121 CNTNAP1P78357 1384 aa26.69■■□□□ 1.86
SMARCB1-201ENST00000263121 FOXP4Q8IVH2 680 aaPredicted RBP26.69■■□□□ 1.86
SMARCB1-201ENST00000263121 ANP32EQ9BTT0 268 aa26.69■■□□□ 1.86
SMARCB1-201ENST00000263121 GJA3Q9Y6H8 435 aa26.69■■□□□ 1.86
SMARCB1-201ENST00000263121 STK36Q9NRP7 1315 aa26.68■■□□□ 1.86
SMARCB1-201ENST00000263121 DDX11L8A8MPP1 907 aa26.68■■□□□ 1.86
SMARCB1-201ENST00000263121 TCP10L2B9ZVM9 353 aa26.68■■□□□ 1.86
SMARCB1-201ENST00000263121 YBX3P16989 372 aaKnown RBP eCLIP26.68■■□□□ 1.863e-8■■■■□ 19.5
SMARCB1-201ENST00000263121 FAM151AQ8WW52 585 aa26.68■■□□□ 1.86
SMARCB1-201ENST00000263121 KAT14Q9H8E8 782 aa26.68■■□□□ 1.86
SMARCB1-201ENST00000263121 IGKV6D-41A0A0C4DH26 115 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms