RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 AY074887Q8R5F9 132 aa10.32□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Mast4Q811L6 2618 aa10.31□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Trank1Q8BV79 2999 aa10.31□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Gm10642Q3TWM1 71 aa10.31□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Sprr4Q8CGN8 76 aa10.31□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Coa5Q99M07 74 aa10.31□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Fam168bQ80XQ8 194 aa10.3□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Gm12216A0A1W2P827 62 aa10.29□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Phf5aP83870 110 aaKnown RBP10.29□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Gm7138L7N2C3 230 aa10.29□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Gm3238W4VSP7 230 aa10.29□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 FlncQ8VHX6 2726 aaKnown RBP10.27□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Tep1P97499 2629 aa10.25□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 4930507D05RikQ8C9C9 103 aa10.25□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 Znf414Q9DCK4 299 aa10.25□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 Gm5617Q91VN2 117 aa10.24□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 A930002H24RikQ8C8Y3 163 aa10.24□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 Phxr4P15974 95 aa10.23□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 Gm20661K7N787 53 aa10.23□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 Akap13E9Q394 2776 aa10.22□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 Gm10999F6Q4M4 69 aa10.21□□□□□ -0.77
Ccdc88b-201ENSMUST00000113440 Gm7137J3QMW1 236 aa10.19□□□□□ -0.78
Ccdc88b-201ENSMUST00000113440 Gm27235Q3UW50 83 aa10.19□□□□□ -0.78
Ccdc88b-201ENSMUST00000113440 Rpl37aP61514 92 aa10.17□□□□□ -0.78
Ccdc88b-201ENSMUST00000113440 Q8BT88 171 aa10.17□□□□□ -0.78
Ccdc88b-201ENSMUST00000113440 Gm10643Q3URG9 111 aa10.16□□□□□ -0.78
Ccdc88b-201ENSMUST00000113440 SpenQ62504 3644 aaKnown RBP10.16□□□□□ -0.78
Ccdc88b-201ENSMUST00000113440 Igfn1Q3KNY0 2849 aa10.15□□□□□ -0.78
Ccdc88b-201ENSMUST00000113440 HrnrQ8VHD8 2496 aa10.15□□□□□ -0.78
Ccdc88b-201ENSMUST00000113440 A330070K13RikQ8CA53 115 aa10.14□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Gm11213A0A1B0GR83 88 aa10.13□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Gm7276Q3TYW4 209 aa10.12□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Chd9Q8BYH8 2885 aa10.12□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Gpr15lA0A0B4J1N3 78 aa10.12□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 CnbpP53996 178 aaKnown RBP10.11□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Zfhx3Q61329 3726 aa10.11□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Q8BGJ3 129 aa10.09□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Fam229bQ8CF36 80 aa10.09□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Phxr5P08399 672 aa10.09□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 AW011738F6S7Q2 159 aa10.09□□□□□ -0.79
Ccdc88b-201ENSMUST00000113440 Gm10320E9PW43 113 aa10.08□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Smim29Q8R043 75 aa10.08□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Csmd1Q923L3 3564 aa10.07□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Nbeal2Q6ZQA0 2742 aa10.07□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Celsr2Q9R0M0 2920 aa10.07□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Kmt2bO08550 2713 aa10.06□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Zfhx4Q9JJN2 3550 aa10.06□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Hivep1Q03172 2688 aa10.05□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Uqcr11Q9CPX8 56 aa10.05□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Spaca4Q80ZQ0 127 aa10.04□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Mp68P56379 58 aa10.03□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Smg1Q8BKX6 3658 aaKnown RBP10.03□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Col6a5A6H584 2640 aa10.03□□□□□ -0.8
Ccdc88b-201ENSMUST00000113440 Plac8Q9JI48 112 aa10.02□□□□□ -0.81
Ccdc88b-201ENSMUST00000113440 Nf1Q04690 2841 aa10.01□□□□□ -0.81
Ccdc88b-201ENSMUST00000113440 Gm884A2A9H6 3643 aa9.99□□□□□ -0.81
Ccdc88b-201ENSMUST00000113440 Defb9Q8R2I6 67 aa9.98□□□□□ -0.81
Ccdc88b-201ENSMUST00000113440 Tex15F8VPN2 2785 aa9.97□□□□□ -0.81
Ccdc88b-201ENSMUST00000113440 Gm36176A0A1W2P8D5 158 aa9.96□□□□□ -0.81
Ccdc88b-201ENSMUST00000113440 Igsf10Q3V1M1 2594 aa9.94□□□□□ -0.82
Ccdc88b-201ENSMUST00000113440 Chtf8P0CG14 533 aa9.94□□□□□ -0.82
Ccdc88b-201ENSMUST00000113440 LrbaQ9ESE1 2856 aa9.93□□□□□ -0.82
Ccdc88b-201ENSMUST00000113440 Lama5Q61001 3718 aa9.93□□□□□ -0.82
Ccdc88b-201ENSMUST00000113440 RetnlbQ99P86 105 aa9.91□□□□□ -0.82
Ccdc88b-201ENSMUST00000113440 Defb1P56386 69 aa9.9□□□□□ -0.82
Ccdc88b-201ENSMUST00000113440 Fam104aA2A6P4 185 aa9.89□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Pkd1l1Q8R526 2615 aa9.89□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Cystm1Q8K353 104 aa9.88□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Zcchc13Q9D548 170 aa9.88□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Cypt15B1AXS0 87 aa9.88□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Itpr2Q9Z329 2701 aa9.87□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Anapc11Q9CPX9 84 aa9.86□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Stab2Q8R4U0 2559 aa9.85□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Muc5acE9QAQ8 3455 aa9.84□□□□□ -0.83
Ccdc88b-201ENSMUST00000113440 Tenm3Q9WTS6 2715 aa9.83□□□□□ -0.84
Ccdc88b-201ENSMUST00000113440 Gm17349F7BGH6 99 aa9.75□□□□□ -0.85
Ccdc88b-201ENSMUST00000113440 A730071L15RikQ8C4X0 137 aa9.75□□□□□ -0.85
Ccdc88b-201ENSMUST00000113440 Sprr1aQ62266 144 aa9.73□□□□□ -0.85
Ccdc88b-201ENSMUST00000113440 Gm26620Q9CY65 116 aa9.73□□□□□ -0.85
Ccdc88b-201ENSMUST00000113440 Gm20538F6Z9R1 75 aa9.73□□□□□ -0.85
Ccdc88b-201ENSMUST00000113440 Gm9508A0A1W2P7W0 230 aa9.72□□□□□ -0.85
Ccdc88b-201ENSMUST00000113440 OxtP35454 125 aa9.71□□□□□ -0.85
Ccdc88b-201ENSMUST00000113440 9530053A07RikE9PVG8 2581 aa9.71□□□□□ -0.86
Ccdc88b-201ENSMUST00000113440 Rnase13Q5GAM7 153 aa9.7□□□□□ -0.86
Ccdc88b-201ENSMUST00000113440 Gm10065F6TJM2 114 aa9.69□□□□□ -0.86
Ccdc88b-201ENSMUST00000113440 Pdzd2E9Q1M1 2796 aa9.68□□□□□ -0.86
Ccdc88b-201ENSMUST00000113440 SmcpP15265 143 aa9.68□□□□□ -0.86
Ccdc88b-201ENSMUST00000113440 Gm21798J3QNU5 87 aa9.67□□□□□ -0.86
Ccdc88b-201ENSMUST00000113440 NbdyA0A0N4SUI7 68 aa9.65□□□□□ -0.86
Ccdc88b-201ENSMUST00000113440 Helz2E9QAM5 2947 aaKnown RBP9.65□□□□□ -0.87
Ccdc88b-201ENSMUST00000113440 Cypt14J3QPF7 87 aa9.64□□□□□ -0.87
Ccdc88b-201ENSMUST00000113440 2310034C09RikQ9D746 214 aa9.63□□□□□ -0.87
Ccdc88b-201ENSMUST00000113440 Svep1A2AVA0 3567 aa9.62□□□□□ -0.87
Ccdc88b-201ENSMUST00000113440 Gm10139O88245 57 aa9.58□□□□□ -0.88
Ccdc88b-201ENSMUST00000113440 CriptO70333 101 aa9.58□□□□□ -0.88
Ccdc88b-201ENSMUST00000113440 6030445D17RikE9Q8F9 148 aa9.57□□□□□ -0.88
Ccdc88b-201ENSMUST00000113440 ApcQ61315 2845 aa9.56□□□□□ -0.88
Ccdc88b-201ENSMUST00000113440 OtogO55225 2910 aa9.53□□□□□ -0.88
Ccdc88b-201ENSMUST00000113440 Srrm2Q8BTI8 2703 aaKnown RBP9.51□□□□□ -0.89
Ccdc88b-201ENSMUST00000113440 Odf3bQ5M8M2 238 aa9.51□□□□□ -0.89
Retrieved 100 of 22,080 RNA–protein pairs in 12.2 ms