RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 9530003J23RikQ8BM26 151 aa10.95□□□□□ -0.66
Shh-201ENSMUST00000002708 Srrm2Q8BTI8 2703 aaKnown RBP10.95□□□□□ -0.66
Shh-201ENSMUST00000002708 Igkv1-110A0A0B4J1I0 119 aa10.95□□□□□ -0.66
Shh-201ENSMUST00000002708 Kmt2aP55200 3966 aa10.94□□□□□ -0.66
Shh-201ENSMUST00000002708 Igkv8-34A0A0G2JDU0 121 aa10.94□□□□□ -0.66
Shh-201ENSMUST00000002708 Ufsp1Q9CZP0 217 aa10.94□□□□□ -0.66
Shh-201ENSMUST00000002708 A730009L09RikA0A1B0GS82 72 aa10.93□□□□□ -0.66
Shh-201ENSMUST00000002708 2310034G01RikA0A286YDL3 209 aa10.93□□□□□ -0.66
Shh-201ENSMUST00000002708 Tmem258P61166 79 aa10.93□□□□□ -0.66
Shh-201ENSMUST00000002708 Gm10770F7D043 238 aa10.93□□□□□ -0.66
Shh-201ENSMUST00000002708 E130114P18RikF6S0S7 154 aa10.92□□□□□ -0.66
Shh-201ENSMUST00000002708 BikO70337 150 aa10.92□□□□□ -0.66
Shh-201ENSMUST00000002708 Smim29Q8R043 75 aa10.92□□□□□ -0.66
Shh-201ENSMUST00000002708 GhrhP16043 103 aa10.91□□□□□ -0.66
Shh-201ENSMUST00000002708 Reg3bP35230 175 aa10.91□□□□□ -0.66
Shh-201ENSMUST00000002708 Phxr5P08399 672 aa10.91□□□□□ -0.66
Shh-201ENSMUST00000002708 Tcl1b5P56845 121 aa10.91□□□□□ -0.66
Shh-201ENSMUST00000002708 Cd164Q9R0L9 197 aa10.91□□□□□ -0.66
Shh-201ENSMUST00000002708 A830005F24RikQ8BRT5 167 aa10.9□□□□□ -0.66
Shh-201ENSMUST00000002708 Nsd1O88491 2588 aaKnown RBP10.9□□□□□ -0.66
Shh-201ENSMUST00000002708 Inafm2A0A1L1STD6 152 aa10.9□□□□□ -0.67
Shh-201ENSMUST00000002708 SnurfQ9WU12 71 aa10.9□□□□□ -0.67
Shh-201ENSMUST00000002708 Smlr1J3QMJ4 66 aa10.88□□□□□ -0.67
Shh-201ENSMUST00000002708 Gm17577J3QNF7 156 aa10.88□□□□□ -0.67
Shh-201ENSMUST00000002708 Brk1Q91VR8 75 aa10.88□□□□□ -0.67
Shh-201ENSMUST00000002708 Rbm3O89086 153 aaKnown RBP10.88□□□□□ -0.67
Shh-201ENSMUST00000002708 Samd13D3YUG0 102 aa10.86□□□□□ -0.67
Shh-201ENSMUST00000002708 Gm17509Q9CZ61 145 aa10.86□□□□□ -0.67
Shh-201ENSMUST00000002708 9530053A07RikE9PVG8 2581 aa10.86□□□□□ -0.67
Shh-201ENSMUST00000002708 Col6a5A6H584 2640 aa10.86□□□□□ -0.67
Shh-201ENSMUST00000002708 Igkv8-28A0A0G2JE47 121 aa10.86□□□□□ -0.67
Shh-201ENSMUST00000002708 Igkv1-122A0A140T8M9 119 aa10.86□□□□□ -0.67
Shh-201ENSMUST00000002708 Gm19935A0A1B0GSF9 52 aa10.86□□□□□ -0.67
Shh-201ENSMUST00000002708 Rps28P62858 69 aaKnown RBP10.86□□□□□ -0.67
Shh-201ENSMUST00000002708 Cox7b2Q9D2H1 82 aa10.85□□□□□ -0.67
Shh-201ENSMUST00000002708 Gm36176A0A1W2P8D5 158 aa10.85□□□□□ -0.67
Shh-201ENSMUST00000002708 FlnbQ80X90 2602 aaKnown RBP10.84□□□□□ -0.67
Shh-201ENSMUST00000002708 VwfQ8CIZ8 2813 aa10.84□□□□□ -0.67
Shh-201ENSMUST00000002708 Ighv2-5A0A0A6YY69 116 aa10.84□□□□□ -0.67
Shh-201ENSMUST00000002708 Fn1P11276 2477 aaKnown RBP10.83□□□□□ -0.67
Shh-201ENSMUST00000002708 Gm7137J3QMW1 236 aa10.83□□□□□ -0.68
Shh-201ENSMUST00000002708 A330070K13RikQ8CA53 115 aa10.83□□□□□ -0.68
Shh-201ENSMUST00000002708 9430015G10RikA2ASP7 199 aa10.82□□□□□ -0.68
Shh-201ENSMUST00000002708 Fam19a5Q91WE9 132 aa10.82□□□□□ -0.68
Shh-201ENSMUST00000002708 Igkv4-92A0A0B4J1I2 117 aa10.81□□□□□ -0.68
Shh-201ENSMUST00000002708 Elof1P60003 83 aa10.81□□□□□ -0.68
Shh-201ENSMUST00000002708 AplnQ9R0R4 77 aa10.81□□□□□ -0.68
Shh-201ENSMUST00000002708 Dnah3Q8BW94 4083 aa10.8□□□□□ -0.68
Shh-201ENSMUST00000002708 Csmd3Q80T79 3707 aa10.8□□□□□ -0.68
Shh-201ENSMUST00000002708 A0A286YE02 88 aa10.79□□□□□ -0.68
Shh-201ENSMUST00000002708 Camk2n2Q78WH7 79 aa10.79□□□□□ -0.68
Shh-201ENSMUST00000002708 Igkv3-2A0A075B5P0 119 aa10.77□□□□□ -0.69
Shh-201ENSMUST00000002708 Defa27F2Z403 93 aa10.76□□□□□ -0.69
Shh-201ENSMUST00000002708 Vpreb2P13373 142 aa10.76□□□□□ -0.69
Shh-201ENSMUST00000002708 Sprr4Q8CGN8 76 aa10.76□□□□□ -0.69
Shh-201ENSMUST00000002708 Cdk2ap2Q9CPY4 127 aa10.76□□□□□ -0.69
Shh-201ENSMUST00000002708 Dnah10D3YYQ8 4591 aa10.76□□□□□ -0.69
Shh-201ENSMUST00000002708 Sfta2E9PXB6 77 aa10.75□□□□□ -0.69
Shh-201ENSMUST00000002708 HrnrQ8VHD8 2496 aa10.74□□□□□ -0.69
Shh-201ENSMUST00000002708 Trav14-1A0A0G2JF94 121 aa10.74□□□□□ -0.69
Shh-201ENSMUST00000002708 Pou2af1Q64693 256 aa10.74□□□□□ -0.69
Shh-201ENSMUST00000002708 Gm11011D3Z3L9 86 aa10.72□□□□□ -0.69
Shh-201ENSMUST00000002708 Sslp1Q3UN54 99 aa10.72□□□□□ -0.69
Shh-201ENSMUST00000002708 BC048502Q80Y74 154 aa10.72□□□□□ -0.69
Shh-201ENSMUST00000002708 Gm16181B0V2H2 73 aa10.71□□□□□ -0.69
Shh-201ENSMUST00000002708 Pde6gP09174 87 aa10.71□□□□□ -0.7
Shh-201ENSMUST00000002708 6430550D23RikE9Q1X6 194 aa10.7□□□□□ -0.7
Shh-201ENSMUST00000002708 Prr15lQ8JZM2 100 aa10.7□□□□□ -0.7
Shh-201ENSMUST00000002708 Dnah7bL7N1Y0 4068 aa10.7□□□□□ -0.7
Shh-201ENSMUST00000002708 Ighv2-2A0A075B5P8 116 aa10.7□□□□□ -0.7
Shh-201ENSMUST00000002708 P01821 116 aa10.7□□□□□ -0.7
Shh-201ENSMUST00000002708 Ndufc1Q9CQY9 76 aa10.69□□□□□ -0.7
Shh-201ENSMUST00000002708 Gm5617Q91VN2 117 aa10.69□□□□□ -0.7
Shh-201ENSMUST00000002708 Fam168bQ80XQ8 194 aa10.68□□□□□ -0.7
Shh-201ENSMUST00000002708 Wfdc17Q5SSJ1 76 aa10.68□□□□□ -0.7
Shh-201ENSMUST00000002708 Gm16485Q8C4B7 115 aa10.68□□□□□ -0.7
Shh-201ENSMUST00000002708 Dnah14A0A140LIJ4 4489 aa10.67□□□□□ -0.7
Shh-201ENSMUST00000002708 P06320 134 aa10.66□□□□□ -0.7
Shh-201ENSMUST00000002708 Defb40Q70KL2 73 aa10.65□□□□□ -0.71
Shh-201ENSMUST00000002708 Dnah6E9Q0B6 4144 aa10.64□□□□□ -0.71
Shh-201ENSMUST00000002708 C130032M10RikQ8C888 123 aa10.64□□□□□ -0.71
Shh-201ENSMUST00000002708 Sprr2jO70561 109 aa10.63□□□□□ -0.71
Shh-201ENSMUST00000002708 Q8BT88 171 aa10.63□□□□□ -0.71
Shh-201ENSMUST00000002708 Gm7276Q3TYW4 209 aa10.62□□□□□ -0.71
Shh-201ENSMUST00000002708 H2al1aQ5M8Q2 105 aa10.61□□□□□ -0.71
Shh-201ENSMUST00000002708 Pet100P0DJE0 76 aa10.61□□□□□ -0.71
Shh-201ENSMUST00000002708 Cox6a2P43023 97 aa10.61□□□□□ -0.71
Shh-201ENSMUST00000002708 Spink8Q09TK9 105 aa10.61□□□□□ -0.71
Shh-201ENSMUST00000002708 Serp1Q9Z1W5 66 aa10.61□□□□□ -0.71
Shh-201ENSMUST00000002708 Vpreb1P13372 142 aa10.6□□□□□ -0.71
Shh-201ENSMUST00000002708 Gm10570F6VB42 170 aa10.59□□□□□ -0.71
Shh-201ENSMUST00000002708 A530084C06RikQ3UTW2 186 aa10.59□□□□□ -0.71
Shh-201ENSMUST00000002708 Gm44790A0A0N4SV91 103 aa10.58□□□□□ -0.72
Shh-201ENSMUST00000002708 P84750 121 aa10.58□□□□□ -0.72
Shh-201ENSMUST00000002708 PscaP57096 123 aa10.58□□□□□ -0.72
Shh-201ENSMUST00000002708 Gm10401E9Q3K6 71 aa10.57□□□□□ -0.72
Shh-201ENSMUST00000002708 Dph3Q8K0W9 82 aa10.57□□□□□ -0.72
Shh-201ENSMUST00000002708 Defb12Q8K4N3 78 aa10.57□□□□□ -0.72
Shh-201ENSMUST00000002708 TgO08710 2766 aa10.56□□□□□ -0.72
Shh-201ENSMUST00000002708 Mrpl34Q99N91 92 aa10.56□□□□□ -0.72
Retrieved 100 of 22,080 RNA–protein pairs in 7.7 ms