RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	CNE1	P27825	502 aa		5.7	□□□□□ -1.5
RRP40	YOL142W	YMC1	P32331	307 aa		5.7	□□□□□ -1.5
RRP40	YOL142W	PIH1	P38768	344 aa		5.7	□□□□□ -1.5
RRP40	YOL142W	CPR8	P53728	308 aa		5.7	□□□□□ -1.5
RRP40	YOL142W	YPL216W	Q08964	1102 aa		5.7	□□□□□ -1.5
RRP40	YOL142W	SLM3	Q12093	417 aa		5.7	□□□□□ -1.5
RRP40	YOL142W	ADE5,7	P07244	802 aa	Known RBP	5.69	□□□□□ -1.5
RRP40	YOL142W	VPS33	P20795	691 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	CWH43	P25618	953 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	CAP1	P28495	268 aa	Known RBP	5.69	□□□□□ -1.5
RRP40	YOL142W	YJL193W	P39542	402 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	MNT2	P53059	558 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	HOL1	P53389	586 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	BUD17	P53727	317 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	TAP42	Q04372	366 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	PHM6	Q05637	104 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	ULA1	Q12059	462 aa		5.69	□□□□□ -1.5
RRP40	YOL142W	RIM4	P38741	713 aa		5.68	□□□□□ -1.5
RRP40	YOL142W	RPS15	Q01855	142 aa	Known RBP	5.68	□□□□□ -1.5
RRP40	YOL142W	ARG7	Q04728	441 aa		5.68	□□□□□ -1.5
RRP40	YOL142W	COQ11	Q05892	277 aa		5.68	□□□□□ -1.5
RRP40	YOL142W	SLK19	Q08581	821 aa	Known RBP	5.68	□□□□□ -1.5
RRP40	YOL142W	ZPS1	Q12512	249 aa		5.68	□□□□□ -1.5
RRP40	YOL142W	UTP10	P42945	1769 aa	Known RBP	5.67	□□□□□ -1.5
RRP40	YOL142W	PCK1	P10963	549 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	YEF3	P16521	1044 aa	Known RBP	5.67	□□□□□ -1.5
RRP40	YOL142W	VPS34	P22543	875 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	STL1	P39932	569 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	MDR1	P53258	950 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	FMP30	Q02883	468 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	YDL073W	Q07454	984 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	SLX4	Q12098	748 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	RTK1	Q12100	620 aa	Predicted RBP	5.67	□□□□□ -1.5
RRP40	YOL142W	YNL162W-A	Q3E7A8	72 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	SEC3	P33332	1336 aa	Known RBP	5.67	□□□□□ -1.5
RRP40	YOL142W	SIR4	P11978	1358 aa		5.67	□□□□□ -1.5
RRP40	YOL142W	ROM2	P51862	1356 aa	Known RBP	5.67	□□□□□ -1.5
RRP40	YOL142W	MRI1	Q06489	411 aa	Known RBP	5.66	□□□□□ -1.5
RRP40	YOL142W	OSW1	Q08692	278 aa		5.66	□□□□□ -1.5
RRP40	YOL142W	CPA2	P03965	1118 aa	Known RBP	5.65	□□□□□ -1.5
RRP40	YOL142W	SEC12	P11655	471 aa		5.65	□□□□□ -1.5
RRP40	YOL142W	ARG1	P22768	420 aa		5.65	□□□□□ -1.5
RRP40	YOL142W	MAD2	P40958	196 aa		5.65	□□□□□ -1.5
RRP40	YOL142W	COQ6	P53318	479 aa		5.65	□□□□□ -1.5
RRP40	YOL142W	YNL018C	P53976	612 aa		5.65	□□□□□ -1.5
RRP40	YOL142W	USA1	Q03714	838 aa		5.65	□□□□□ -1.5
RRP40	YOL142W	HIM1	Q06674	414 aa		5.65	□□□□□ -1.5
RRP40	YOL142W	RPO41	P13433	1351 aa	Known RBP	5.65	□□□□□ -1.51
RRP40	YOL142W	AAD3	P25612	363 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	DSS4	P32601	143 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	LOT5	P34234	306 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	CCL1	P37366	393 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	YIL092W	P40497	633 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	YNR071C	P53757	342 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	THI7	Q05998	598 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	TGS1	Q12052	315 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	DIN7	Q12086	430 aa		5.64	□□□□□ -1.51
RRP40	YOL142W	URA3	P03962	267 aa		5.63	□□□□□ -1.51
RRP40	YOL142W	WHI2	P12611	486 aa		5.63	□□□□□ -1.51
RRP40	YOL142W	HOM2	P13663	365 aa	Known RBP	5.63	□□□□□ -1.51
RRP40	YOL142W	PMA2	P19657	947 aa		5.63	□□□□□ -1.51
RRP40	YOL142W	DOT5	P40553	215 aa		5.63	□□□□□ -1.51
RRP40	YOL142W	HOS1	Q12214	470 aa		5.63	□□□□□ -1.51
RRP40	YOL142W	YRF1-4	O13559	1382 aa		5.63	□□□□□ -1.51
RRP40	YOL142W	EDE1	P34216	1381 aa		5.63	□□□□□ -1.51
RRP40	YOL142W	RPL7A	P05737	244 aa	Known RBP	5.62	□□□□□ -1.51
RRP40	YOL142W	PET309	P32522	965 aa	Predicted RBP	5.62	□□□□□ -1.51
RRP40	YOL142W	YPT10	P38146	199 aa		5.62	□□□□□ -1.51
RRP40	YOL142W	SSP120	P39931	234 aa	Known RBP	5.62	□□□□□ -1.51
RRP40	YOL142W	SAP4	P53036	818 aa		5.62	□□□□□ -1.51
RRP40	YOL142W	HOF1	Q05080	669 aa		5.62	□□□□□ -1.51
RRP40	YOL142W	PSF3	Q12146	194 aa		5.62	□□□□□ -1.51
RRP40	YOL142W	RPL7B	Q12213	244 aa	Known RBP	5.62	□□□□□ -1.51
RRP40	YOL142W	ORC2	P32833	620 aa		5.61	□□□□□ -1.51
RRP40	YOL142W	TAX4	P47030	604 aa		5.61	□□□□□ -1.51
RRP40	YOL142W	SPT7	P35177	1332 aa		5.6	□□□□□ -1.51
RRP40	YOL142W	BET2	P20133	325 aa		5.6	□□□□□ -1.51
RRP40	YOL142W	RNR3	P21672	869 aa	Known RBP	5.6	□□□□□ -1.51
RRP40	YOL142W	YNL034W	P53963	612 aa		5.6	□□□□□ -1.51
RRP40	YOL142W	ERG11	P10614	530 aa		5.59	□□□□□ -1.51
RRP40	YOL142W	PHO3	P24031	467 aa		5.59	□□□□□ -1.51
RRP40	YOL142W	YKL133C	P36066	463 aa		5.59	□□□□□ -1.51
RRP40	YOL142W	RRP46	P53256	223 aa	Predicted RBP	5.59	□□□□□ -1.51
RRP40	YOL142W	TGL2	P54857	326 aa		5.59	□□□□□ -1.51
RRP40	YOL142W	GFD1	Q04839	188 aa	Known RBP	5.59	□□□□□ -1.51
RRP40	YOL142W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	5.59	□□□□□ -1.51	not detected
RRP40	YOL142W	NUR1	Q12066	484 aa		5.59	□□□□□ -1.51
RRP40	YOL142W	DBP10	Q12389	995 aa	Known RBP	5.59	□□□□□ -1.51
RRP40	YOL142W	AI5_ALPHA	Q9ZZX1	630 aa		5.59	□□□□□ -1.51
RRP40	YOL142W	SCS2	P40075	244 aa	Known RBP	5.58	□□□□□ -1.52
RRP40	YOL142W	GSM1	P42950	618 aa		5.58	□□□□□ -1.52
RRP40	YOL142W	YFL015C	P43578	164 aa		5.58	□□□□□ -1.52
RRP40	YOL142W	PIP2	P52960	996 aa		5.58	□□□□□ -1.52
RRP40	YOL142W	CNM67	P53865	581 aa	Known RBP	5.58	□□□□□ -1.52
RRP40	YOL142W	ADE16	P54113	591 aa	Known RBP	5.58	□□□□□ -1.52
RRP40	YOL142W	HEM1	P09950	548 aa	Predicted RBP	5.57	□□□□□ -1.52
RRP40	YOL142W	YPK1	P12688	680 aa	Known RBP	5.57	□□□□□ -1.52
RRP40	YOL142W	MDM10	P18409	493 aa		5.57	□□□□□ -1.52
RRP40	YOL142W	TGL1	P34163	548 aa		5.57	□□□□□ -1.52
RRP40	YOL142W	HOT13	P36078	116 aa		5.57	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 31.9 ms