RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	NFS1	P25374	497 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	YCL002C	P25565	263 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	SEC21	P32074	935 aa	Known RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	GIC1	P38785	314 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	SSZ1	P38788	538 aa	Known RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	UME6	P39001	836 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	RPN3	P40016	523 aa	Known RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	PRM2	P40534	656 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	LYS14	P40971	790 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	POL31	P46957	487 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	VPS75	P53853	264 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	PEX25	Q02969	394 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	HEL2	Q05580	639 aa	Known RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	RPN7	Q06103	429 aa	Known RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	IWR1	Q07532	353 aa	Predicted RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	ISA2	Q12425	185 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	RRP36	Q12481	300 aa	Predicted RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	STF1	P01098	86 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	TUB2	P02557	457 aa	Known RBP	4.17	□□□□□ -1.74
PUB1	YNL016W	HIP1	P06775	603 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	SNF3	P10870	884 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	GLN4	P13188	809 aa	Known RBP	4.17	□□□□□ -1.74
PUB1	YNL016W	BET2	P20133	325 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	TRX1	P22217	103 aa	Known RBP	4.17	□□□□□ -1.74
PUB1	YNL016W	ADK2	P26364	225 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	CTF13	P35203	478 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	SET3	P36124	751 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	REI1	P38344	393 aa	Predicted RBP	4.17	□□□□□ -1.74
PUB1	YNL016W	UBP7	P40453	1071 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	MAD2	P40958	196 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	SIP4	P46954	829 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	BRE5	P53741	515 aa	Known RBP	4.17	□□□□□ -1.74
PUB1	YNL016W	BSC5	P53755	489 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	NOP15	P53927	220 aa	Predicted RBP	4.17	□□□□□ -1.74
PUB1	YNL016W	SRT1	Q03175	343 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	ARP9	Q05123	467 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	RSA3	Q05942	220 aa	Known RBP	4.17	□□□□□ -1.74
PUB1	YNL016W	RTK1	Q12100	620 aa	Predicted RBP	4.17	□□□□□ -1.74
PUB1	YNL016W	SUT2	Q12286	268 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	ZRT2	Q12436	422 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	NSI1	Q12457	570 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	YLR149C	Q99296	730 aa		4.17	□□□□□ -1.74
PUB1	YNL016W	MRP10	O75012	95 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	TUF1	P02992	437 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	YEL076C-A	P0CX16	216 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	YLR464W	P0CX17	216 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	POL3	P15436	1097 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	MNE1	P24720	663 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	STE50	P25344	346 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	SRO9	P25567	434 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	GPI10	P30777	616 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	MF(ALPHA)2	P32435	120 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	TEF4	P36008	412 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	FTH1	P38310	465 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	MSC7	P38694	644 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	SET5	P38890	526 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	VPS41	P38959	992 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	PIK1	P39104	1066 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	AFG3	P39925	761 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	YEL076C	P39971	216 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	VAB2	P40003	282 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	NEO1	P40527	1151 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	LEM3	P42838	414 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	CIT3	P43635	486 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	FYV8	P46949	817 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	MDE1	P47095	244 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	PSP1	P50896	841 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	IMA1	P53051	589 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	DUO1	P53168	247 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	ARP4	P80428	489 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
PUB1	YNL016W	FMP30	Q02883	468 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	TRI1	Q05024	226 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	YPL277C	Q08989	487 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	DIN7	Q12086	430 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	SGT2	Q12118	346 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	NFI1	Q12216	726 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	MDM20	Q12387	796 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	PDH1	Q12428	516 aa	Known RBP	4.16	□□□□□ -1.74
PUB1	YNL016W	Q0142	Q9ZZW4	58 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	TUS1	Q06412	1307 aa		4.16	□□□□□ -1.74
PUB1	YNL016W	PRP22	P24384	1145 aa	Known RBP	4.15	□□□□□ -1.74
PUB1	YNL016W	RRP7	P25368	297 aa	Predicted RBP	4.15	□□□□□ -1.74
PUB1	YNL016W	SWC3	P31376	625 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	IME2	P32581	645 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	MRPL36	P36531	177 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	YBL028C	P38202	106 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	RFC1	P38630	861 aa	Known RBP	4.15	□□□□□ -1.74
PUB1	YNL016W	GPB2	P39717	880 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	GDI1	P39958	451 aa	Known RBP	4.15	□□□□□ -1.74
PUB1	YNL016W	YEL025C	P39991	1188 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	PCL7	P40186	285 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	SPO22	P40511	975 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	ENP2	P48234	707 aa	Known RBP	4.15	□□□□□ -1.74
PUB1	YNL016W	PSP2	P50109	593 aa	Known RBP	4.15	□□□□□ -1.74
PUB1	YNL016W	SEC5	P89102	971 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	YOR059C	Q08448	450 aa	Known RBP	4.15	□□□□□ -1.74
PUB1	YNL016W	THI21	Q08975	551 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	SKS1	Q12505	502 aa		4.15	□□□□□ -1.74
PUB1	YNL016W	PCD1	Q12524	340 aa		4.15	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms