RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PICALMQ13492 652 aa21.68■■□□□ 1.06
CLN3-254ENST00000637050 SLC4A8Q2Y0W8 1093 aa21.68■■□□□ 1.06
CLN3-254ENST00000637050 OGFOD1Q8N543 542 aa21.68■■□□□ 1.06
CLN3-254ENST00000637050 GTF3C6Q969F1 213 aa21.68■■□□□ 1.06
CLN3-254ENST00000637050 ANP32EQ9BTT0 268 aa21.68■■□□□ 1.06
CLN3-254ENST00000637050 NPM3O75607 178 aaKnown RBP21.67■■□□□ 1.06
CLN3-254ENST00000637050 PRDM1O75626 825 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 LIFRP42702 1097 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 STK3Q13188 491 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 TMEM67Q5HYA8 995 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 ARHGAP27Q6ZUM4 889 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 SGMS1Q86VZ5 419 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 DYNLL2Q96FJ2 89 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 PRMT6Q96LA8 375 aaPredicted RBP21.67■■□□□ 1.06
CLN3-254ENST00000637050 OSBPL5Q9H0X9 879 aaPredicted RBP21.67■■□□□ 1.06
CLN3-254ENST00000637050 LY9Q9HBG7 655 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 BRPF3Q9ULD4 1205 aa21.67■■□□□ 1.06
CLN3-254ENST00000637050 IFIT3O14879 490 aaKnown RBP21.66■■□□□ 1.06
CLN3-254ENST00000637050 RANBP6O60518 1105 aaKnown RBP21.66■■□□□ 1.06
CLN3-254ENST00000637050 NFIAQ12857 509 aa21.66■■□□□ 1.06
CLN3-254ENST00000637050 SART3Q15020 963 aaKnown RBP21.66■■□□□ 1.06
CLN3-254ENST00000637050 KLF18A0A0U1RQI7 1052 aa21.66■■□□□ 1.06
CLN3-254ENST00000637050 SPDYE2BA6NHP3 402 aa21.66■■□□□ 1.06
CLN3-254ENST00000637050 SPDYE6P0CI01 402 aa21.66■■□□□ 1.06
CLN3-254ENST00000637050 RPS12P25398 132 aaKnown RBP21.66■■□□□ 1.06
CLN3-254ENST00000637050 MMP14P50281 582 aa21.66■■□□□ 1.06
CLN3-254ENST00000637050 C16orf86Q6ZW13 317 aa21.66■■□□□ 1.06
CLN3-254ENST00000637050 MTMR14Q8NCE2 650 aa21.66■■□□□ 1.06
CLN3-254ENST00000637050 LMNB1P20700 586 aa21.65■■□□□ 1.06
CLN3-254ENST00000637050 EIF6P56537 245 aaKnown RBP21.65■■□□□ 1.06
CLN3-254ENST00000637050 SCRN1Q12765 414 aa21.65■■□□□ 1.06
CLN3-254ENST00000637050 DLGAP5Q15398 846 aa21.65■■□□□ 1.06
CLN3-254ENST00000637050 TTC6Q86TZ1 520 aa21.65■■□□□ 1.06
CLN3-254ENST00000637050 UBAC1Q9BSL1 405 aa21.65■■□□□ 1.06
CLN3-254ENST00000637050 TDRD3Q9H7E2 651 aaKnown RBP21.65■■□□□ 1.06
CLN3-254ENST00000637050 SENP2Q9HC62 589 aa21.65■■□□□ 1.06
CLN3-254ENST00000637050 FAM198AQ9UFP1 575 aa21.65■■□□□ 1.06
CLN3-254ENST00000637050 SMC3Q9UQE7 1217 aa21.65■■□□□ 1.06
CLN3-254ENST00000637050 SEC23AQ15436 765 aa21.64■■□□□ 1.05
CLN3-254ENST00000637050 ZKSCAN3Q9BRR0 538 aa21.64■■□□□ 1.05
CLN3-254ENST00000637050 ZNF287Q9HBT7 754 aa21.64■■□□□ 1.05
CLN3-254ENST00000637050 ERICH2A1L162 156 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 CACNB3P54284 484 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 WTAPQ15007 396 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 IQCA1Q86XH1 822 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 TMTC2Q8N394 836 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 ZSCAN10Q96SZ4 725 aaPredicted RBP21.63■■□□□ 1.05
CLN3-254ENST00000637050 HPS5Q9UPZ3 1129 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 DICER1Q9UPY3 1922 aaKnown RBP21.63■■□□□ 1.05
CLN3-254ENST00000637050 CDK8P49336 464 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 GABPAQ06546 454 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 APOA5Q6Q788 366 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 SLC44A5Q8NCS7 719 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 CHMP4CQ96CF2 233 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 ZBED3Q96IU2 234 aaPredicted RBP21.63■■□□□ 1.05
CLN3-254ENST00000637050 MKNK2Q9HBH9 465 aa21.63■■□□□ 1.05
CLN3-254ENST00000637050 NAP1L2Q9ULW6 460 aaPredicted RBP21.63■■□□□ 1.05
CLN3-254ENST00000637050 TNKSO95271 1327 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 GOLGA8BA8MQT2 603 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 ENTPD3O75355 529 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 YBX3P16989 372 aaKnown RBP eCLIP21.62■■□□□ 1.05
CLN3-254ENST00000637050 RASA1P20936 1047 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 ZNF280AP59817 542 aaPredicted RBP21.62■■□□□ 1.05
CLN3-254ENST00000637050 NUCB2P80303 420 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 RAB3GAP1Q15042 981 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 FAM47AQ5JRC9 791 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 ZFPM1Q8IX07 1006 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 DPF2Q92785 391 aa21.62■■□□□ 1.05
CLN3-254ENST00000637050 LLPHQ9BRT6 129 aaKnown RBP21.62■■□□□ 1.05
CLN3-254ENST00000637050 DHX36Q9H2U1 1008 aaKnown RBP21.62■■□□□ 1.05
CLN3-254ENST00000637050 TSPY2A6NKD2 308 aa21.61■■□□□ 1.05
CLN3-254ENST00000637050 GJB2P29033 226 aa21.61■■□□□ 1.05
CLN3-254ENST00000637050 CCT2P78371 535 aaKnown RBP21.61■■□□□ 1.05
CLN3-254ENST00000637050 NFXL1Q6ZNB6 911 aa21.61■■□□□ 1.05
CLN3-254ENST00000637050 ENAHQ8N8S7 591 aaPredicted RBP21.61■■□□□ 1.05
CLN3-254ENST00000637050 COL2A1P02458 1487 aaPredicted RBP21.61■■□□□ 1.05
CLN3-254ENST00000637050 ZNF541Q9H0D2 1346 aa21.61■■□□□ 1.05
CLN3-254ENST00000637050 SBF1O95248 1867 aa21.61■■□□□ 1.05
CLN3-254ENST00000637050 CCDC69A6NI79 296 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 TFAP4Q01664 338 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 SPDYE2Q495Y8 402 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 ZNF444Q8N0Y2 327 aaPredicted RBP21.6■■□□□ 1.05
CLN3-254ENST00000637050 EHD4Q9H223 541 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 NCOA5Q9HCD5 579 aaKnown RBP21.6■■□□□ 1.05
CLN3-254ENST00000637050 ZNF70Q9UC06 446 aaPredicted RBP21.6■■□□□ 1.05
CLN3-254ENST00000637050 SERPINB13Q9UIV8 391 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 HLA-DOAP06340 250 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 GMPSP49915 693 aaPredicted RBP21.6■■□□□ 1.05
CLN3-254ENST00000637050 TCP10Q12799 353 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 PKP1Q13835 747 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 SMARCC2Q8TAQ2 1214 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 MYOZ2Q9NPC6 264 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 TCP11L1Q9NUJ3 509 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 TMOD2Q9NZR1 351 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 SLC12A7Q9Y666 1083 aa21.6■■□□□ 1.05
CLN3-254ENST00000637050 ATRNL1Q5VV63 1379 aa21.59■■□□□ 1.05
CLN3-254ENST00000637050 CTDNEP1O95476 244 aa21.59■■□□□ 1.05
CLN3-254ENST00000637050 RCAN1P53805 252 aa21.59■■□□□ 1.05
CLN3-254ENST00000637050 SWAP70Q9UH65 585 aa21.59■■□□□ 1.05
CLN3-254ENST00000637050 TAOK2Q9UL54 1235 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms