RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NR5A1Q13285 461 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 ATL3Q6DD88 541 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 DRC7Q8IY82 874 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 FANCBQ8NB91 859 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 ZNF500O60304 480 aaPredicted RBP12.31□□□□□ -0.44
CUX1-221ENST00000622516 AXDND1Q5T1B0 1012 aaPredicted RBP12.31□□□□□ -0.44
CUX1-221ENST00000622516 ENAHQ8N8S7 591 aaPredicted RBP12.31□□□□□ -0.44
CUX1-221ENST00000622516 CNBD1Q8NA66 436 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 KCNG4Q8TDN1 519 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 ESR2Q92731 530 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 RNF41Q9H4P4 317 aaPredicted RBP12.31□□□□□ -0.44
CUX1-221ENST00000622516 MROH7-TTC4A0A0A0MT08 1334 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 MYH13Q9UKX3 1938 aa12.31□□□□□ -0.44
CUX1-221ENST00000622516 CASZ1Q86V15 1759 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 DIXDC1Q155Q3 683 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 OXER1Q8TDS5 423 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.3□□□□□ -0.44
CUX1-221ENST00000622516 ZNF202O95125 648 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 FMNL1O95466 1100 aaPredicted RBP12.3□□□□□ -0.44
CUX1-221ENST00000622516 LAMB2P55268 1798 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 CACNA1SQ13698 1873 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 OFD1O75665 1012 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 YEATS4O95619 227 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 PFKFB1P16118 471 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 IFNAR1P17181 557 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 PTGS1P23219 599 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 DIS3L2Q8IYB7 885 aaKnown RBP12.3□□□□□ -0.44
CUX1-221ENST00000622516 CRACR2BQ8N4Y2 399 aaPredicted RBP12.3□□□□□ -0.44
CUX1-221ENST00000622516 ANKRD2Q9GZV1 360 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 KCNF1Q9H3M0 494 aa12.3□□□□□ -0.44
CUX1-221ENST00000622516 PLEKHA8P1O95397 391 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 USP17L8P0C7I0 530 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 SLC39A14Q15043 492 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 SEC23AQ15436 765 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 NBPF11Q86T75 865 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 DZIP1Q86YF9 867 aaKnown RBP12.29□□□□□ -0.44
CUX1-221ENST00000622516 TRIM22Q8IYM9 498 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 ZSCAN10Q96SZ4 725 aaPredicted RBP12.29□□□□□ -0.44
CUX1-221ENST00000622516 DCP1AQ9NPI6 582 aaPredicted RBP12.29□□□□□ -0.44
CUX1-221ENST00000622516 MTMR7Q9Y216 660 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 GRIN1Q05586 938 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 KIAA2012Q0VF49 1180 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 IQCB1Q15051 598 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 IFIT1BQ5T764 474 aaKnown RBP12.29□□□□□ -0.44
CUX1-221ENST00000622516 MCM9Q9NXL9 1143 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 VPS54Q9P1Q0 977 aa12.29□□□□□ -0.44
CUX1-221ENST00000622516 FAM205CA6NFA0 338 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 GOLGA6L19H0YKK7 550 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 TRIM37O94972 964 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 LRMPQ12912 555 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 STX1AQ16623 288 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 DPCR1Q3MIW9 517 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 DNTTIP2Q5QJE6 756 aaKnown RBP12.28□□□□□ -0.44
CUX1-221ENST00000622516 PRR5LQ6MZQ0 368 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 SHC4Q6S5L8 630 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 SHISA4Q96DD7 197 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 MAP3K14Q99558 947 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 PYCARDQ9ULZ3 195 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 A0A1W2PQ27 194 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 A0A1W2PQ64 194 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 A0A1W2PQD8 194 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 BECN2A8MW95 431 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 U2AF2P26368 475 aaKnown RBP eCLIP12.28□□□□□ -0.441e-7■■■■■ 27.9
CUX1-221ENST00000622516 TOB1P50616 345 aaPredicted RBP12.28□□□□□ -0.44
CUX1-221ENST00000622516 PTPAQ15257 358 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 PAXIP1Q6ZW49 1069 aaPredicted RBP12.28□□□□□ -0.44
CUX1-221ENST00000622516 CCDC186Q7Z3E2 898 aa12.28□□□□□ -0.44
CUX1-221ENST00000622516 V9GY48 417 aaPredicted RBP12.28□□□□□ -0.44
CUX1-221ENST00000622516 CTAGE5O15320 804 aa12.27□□□□□ -0.44
CUX1-221ENST00000622516 MMP1P03956 469 aa12.27□□□□□ -0.44
CUX1-221ENST00000622516 NOSTRINQ8IVI9 506 aa12.27□□□□□ -0.44
CUX1-221ENST00000622516 AOPEPQ8N6M6 819 aa12.27□□□□□ -0.44
CUX1-221ENST00000622516 TDRD7Q8NHU6 1098 aaKnown RBP12.27□□□□□ -0.44
CUX1-221ENST00000622516 DYNLL2Q96FJ2 89 aa12.27□□□□□ -0.44
CUX1-221ENST00000622516 ZNF75DP51815 510 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 DHX40Q8IX18 779 aaKnown RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 BRIP1Q9BX63 1249 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 QTRT2Q9H974 415 aaKnown RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 CABP5Q9NP86 173 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 KIAA1468Q9P260 1216 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 ANAPC4Q9UJX5 808 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 PCDHB6Q9Y5E3 794 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 SPATA31A6Q5VVP1 1343 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 SCN7AQ01118 1682 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 SLC3A2P08195 630 aaKnown RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 VEGFAP15692 232 aaPredicted RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 GRAPQ13588 217 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 NOM1Q5C9Z4 860 aaKnown RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 IQCA1Q86XH1 822 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 DHX37Q8IY37 1157 aaKnown RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 TMTC2Q8N394 836 aa12.27□□□□□ -0.45
CUX1-221ENST00000622516 GRAPLQ8TC17 118 aaPredicted RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 RPGRQ92834 1020 aaKnown RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 CRNKL1Q9BZJ0 848 aaKnown RBP12.27□□□□□ -0.45
CUX1-221ENST00000622516 A0A1B0GUL6 1792 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 GYS1P13807 737 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 CMA1P23946 247 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 SYKP43405 635 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 GPSM2P81274 684 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 HSP90AA2PQ14568 343 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 153.7 ms