RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 STAP2Q9UGK3 403 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 V9GY48 417 aaPredicted RBP12.38□□□□□ -0.43
FAM3A-221ENST00000612856 KIF5BP33176 963 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 TSR1Q2NL82 804 aaKnown RBP12.38□□□□□ -0.43
FAM3A-221ENST00000612856 ZSWIM4Q9H7M6 989 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 RNF181Q9P0P0 153 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 PIM2Q9P1W9 311 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 NOM1Q5C9Z4 860 aaKnown RBP12.38□□□□□ -0.43
FAM3A-221ENST00000612856 LEKR1Q6ZMV7 388 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 DYNLL2Q96FJ2 89 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 FMN2Q9NZ56 1722 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 HMG20BQ9P0W2 317 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 HOOK1Q9UJC3 728 aaKnown RBP12.38□□□□□ -0.43
FAM3A-221ENST00000612856 MINPP1Q9UNW1 487 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 BRD1O95696 1058 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 FGAP02671 866 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 ERCC6LQ2NKX8 1250 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 ARHGAP29Q52LW3 1261 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 JMYQ8N9B5 988 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 CUL5Q93034 780 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 KRT23Q9C075 422 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 PICK1Q9NRD5 415 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 XRN1Q8IZH2 1706 aaKnown RBP12.37□□□□□ -0.43
FAM3A-221ENST00000612856 KDM6AO15550 1401 aaPredicted RBP12.37□□□□□ -0.43
FAM3A-221ENST00000612856 EIF5P55010 431 aaKnown RBP12.37□□□□□ -0.43
FAM3A-221ENST00000612856 ZFYVE27Q5T4F4 411 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 TDRD3Q9H7E2 651 aaKnown RBP12.37□□□□□ -0.43
FAM3A-221ENST00000612856 XDHP47989 1333 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 TOPAZ1Q8N9V7 1692 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 SLC27A2O14975 620 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 CALM1P0DP23 149 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 CALM2P0DP24 149 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 CALM3P0DP25 149 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 NAP1L1P55209 391 aaKnown RBP12.37□□□□□ -0.43
FAM3A-221ENST00000612856 CCDC174Q6PII3 467 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 SULF1Q8IWU6 871 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 FAM200AQ8TCP9 573 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 DRC1Q96MC2 740 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 SPON1Q9HCB6 807 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 USP17L8P0C7I0 530 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 PLCG2P16885 1265 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 ATP5JP18859 108 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 ATP2B4P23634 1241 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 SLC1A4P43007 532 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 SCARF1Q14162 830 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 PRR5LQ6MZQ0 368 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 POTEAQ6S8J7 498 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 DHX32Q7L7V1 743 aaKnown RBP12.37□□□□□ -0.43
FAM3A-221ENST00000612856 PUS7LQ9H0K6 701 aaKnown RBP12.37□□□□□ -0.43
FAM3A-221ENST00000612856 DEF6Q9H4E7 631 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 DACT1Q9NYF0 836 aa12.37□□□□□ -0.43
FAM3A-221ENST00000612856 DDX41Q9UJV9 622 aaKnown RBP12.37□□□□□ -0.43
FAM3A-221ENST00000612856 H7C1W4 665 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 JAK2O60674 1132 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 SLFN14P0C7P3 912 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 COL23A1Q86Y22 540 aaPredicted RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 KIFC2Q96AC6 838 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 FRMPD2Q68DX3 1309 aaPredicted RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 ERVV-1B6SEH8 477 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 ZSCAN22P10073 491 aaPredicted RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 DHX37Q8IY37 1157 aaKnown RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 GPHNQ9NQX3 736 aaPredicted RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 BMP2KQ9NSY1 1161 aaPredicted RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 BBOX1O75936 387 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 SLU7O95391 586 aaKnown RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 ADD1P35611 737 aaKnown RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 TYRO3Q06418 890 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 NKX1-1Q15270 411 aaPredicted RBP12.36□□□□□ -0.43
FAM3A-221ENST00000612856 JAKMIP3Q5VZ66 844 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 CSRNP1Q96S65 589 aa12.36□□□□□ -0.43
FAM3A-221ENST00000612856 LTN1O94822 1766 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 RGPD2P0DJD1 1756 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 LARGE1O95461 756 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 AFMP43652 599 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 GRAPQ13588 217 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 SPECC1Q5M775 1068 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 GRAPLQ8TC17 118 aaPredicted RBP12.35□□□□□ -0.43
FAM3A-221ENST00000612856 SMCR8Q8TEV9 937 aaPredicted RBP12.35□□□□□ -0.43
FAM3A-221ENST00000612856 LSG1Q9H089 658 aaKnown RBP12.35□□□□□ -0.43
FAM3A-221ENST00000612856 TAOK3Q9H2K8 898 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 RAD50Q92878 1312 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 WTIPA6NIX2 430 aaPredicted RBP12.35□□□□□ -0.43
FAM3A-221ENST00000612856 HSPA4P34932 840 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 CEP89Q96ST8 783 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 CPVLQ9H3G5 476 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 TAF6LQ9Y6J9 622 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 NWD1Q149M9 1564 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 NFAT5O94916 1531 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 FBXO38Q6PIJ6 1188 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 SYT10Q6XYQ8 523 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 SLC44A5Q8NCS7 719 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 ANKRD20A12PQ8NF67 263 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 SMARCC2Q8TAQ2 1214 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 OSBP2Q969R2 916 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 PRM3Q9NNZ6 103 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 KCNJ14Q9UNX9 436 aa12.35□□□□□ -0.43
FAM3A-221ENST00000612856 PTPDC1A2A3K4 754 aa12.34□□□□□ -0.43
FAM3A-221ENST00000612856 CHMP2AO43633 222 aa12.34□□□□□ -0.43
FAM3A-221ENST00000612856 CFBP00751 764 aa12.34□□□□□ -0.43
FAM3A-221ENST00000612856 HSPD1P10809 573 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms