RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 AATFQ9NY61 560 aaKnown RBP eCLIP16.16■□□□□ 0.181e-6■□□□□ 10
RPS28-204ENST00000602140 BIN2Q9UBW5 565 aaPredicted RBP16.16■□□□□ 0.18
RPS28-204ENST00000602140 GABRQQ9UN88 632 aa16.16■□□□□ 0.18
RPS28-204ENST00000602140 AGTPBP1Q9UPW5 1226 aa16.16■□□□□ 0.18
RPS28-204ENST00000602140 PHIPQ8WWQ0 1821 aa16.16■□□□□ 0.18
RPS28-204ENST00000602140 SPP2Q13103 211 aa16.15■□□□□ 0.18
RPS28-204ENST00000602140 HABP4Q5JVS0 413 aaKnown RBP16.15■□□□□ 0.18
RPS28-204ENST00000602140 TREML2Q5T2D2 321 aa16.15■□□□□ 0.18
RPS28-204ENST00000602140 ITPRIPQ8IWB1 547 aa16.15■□□□□ 0.18
RPS28-204ENST00000602140 PTPRFP10586 1907 aa16.15■□□□□ 0.18
RPS28-204ENST00000602140 BAG3O95817 575 aa16.14■□□□□ 0.17
RPS28-204ENST00000602140 CYP2E1P05181 493 aaPredicted RBP16.14■□□□□ 0.17
RPS28-204ENST00000602140 CCL5P13501 91 aa16.14■□□□□ 0.17
RPS28-204ENST00000602140 CAP2P40123 477 aa16.14■□□□□ 0.17
RPS28-204ENST00000602140 RRP1BQ14684 758 aaKnown RBP16.14■□□□□ 0.17
RPS28-204ENST00000602140 ZNF280CQ8ND82 737 aa16.14■□□□□ 0.17
RPS28-204ENST00000602140 SHISA4Q96DD7 197 aa16.14■□□□□ 0.17
RPS28-204ENST00000602140 HERC5Q9UII4 1024 aaKnown RBP16.14■□□□□ 0.17
RPS28-204ENST00000602140 ZBTB7BO15156 539 aaPredicted RBP16.13■□□□□ 0.17
RPS28-204ENST00000602140 RLBP1P12271 317 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 PLCG2P16885 1265 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 FLT3LGP49771 235 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 UBXN2AP68543 259 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 ANKRD13CQ8N6S4 541 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 PROCA1Q8NCQ7 364 aaPredicted RBP16.13■□□□□ 0.17
RPS28-204ENST00000602140 SLAIN1Q8ND83 568 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 NKX2-3Q8TAU0 364 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 RNF208Q9H0X6 261 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 PI4KBQ9UBF8 816 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 PNMA3Q9UL41 463 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 NOP58Q9Y2X3 529 aaKnown RBP16.13■□□□□ 0.17
RPS28-204ENST00000602140 MGAMO43451 1857 aa16.13■□□□□ 0.17
RPS28-204ENST00000602140 USP17L5A8MUK1 530 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 TNPO2O14787 897 aaKnown RBP16.12■□□□□ 0.17
RPS28-204ENST00000602140 ADCY3O60266 1144 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 GJB1P08034 283 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 ZAP70P43403 619 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 GJA8P48165 433 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 HMGCS2P54868 508 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 PPP4CP60510 307 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 ADGRA1Q86SQ6 560 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 MAPKAPK5Q8IW41 473 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 MIER1Q8N108 512 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 TGFBRAP1Q8WUH2 860 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 ZNF512BQ96KM6 892 aaPredicted RBP16.12■□□□□ 0.17
RPS28-204ENST00000602140 TBC1D2Q9BYX2 928 aa16.12■□□□□ 0.17
RPS28-204ENST00000602140 CCDC8Q9H0W5 538 aaPredicted RBP16.12■□□□□ 0.17
RPS28-204ENST00000602140 DHX36Q9H2U1 1008 aaKnown RBP16.12■□□□□ 0.17
RPS28-204ENST00000602140 TLR7Q9NYK1 1049 aaKnown RBP16.12■□□□□ 0.17
RPS28-204ENST00000602140 DBNLQ9UJU6 430 aaKnown RBP16.12■□□□□ 0.17
RPS28-204ENST00000602140 MAST2Q6P0Q8 1798 aa16.11■□□□□ 0.17
RPS28-204ENST00000602140 ELNP15502 786 aa16.11■□□□□ 0.17
RPS28-204ENST00000602140 PIH1D3Q9NQM4 214 aaKnown RBP16.11■□□□□ 0.17
RPS28-204ENST00000602140 FLT1P17948 1338 aa16.11■□□□□ 0.17
RPS28-204ENST00000602140 ATAD5Q96QE3 1844 aa16.1■□□□□ 0.17
RPS28-204ENST00000602140 PABPC4Q13310 644 aaKnown RBP eCLIP16.1■□□□□ 0.178e-9■■□□□ 14.3
RPS28-204ENST00000602140 IRF5Q13568 498 aa16.1■□□□□ 0.17
RPS28-204ENST00000602140 FAM110CQ1W6H9 321 aa16.1■□□□□ 0.17
RPS28-204ENST00000602140 CRACR2BQ8N4Y2 399 aaPredicted RBP16.1■□□□□ 0.17
RPS28-204ENST00000602140 COA7Q96BR5 231 aa16.1■□□□□ 0.17
RPS28-204ENST00000602140 EAF2Q96CJ1 260 aaPredicted RBP16.1■□□□□ 0.17
RPS28-204ENST00000602140 UNC93B1Q9H1C4 597 aa16.1■□□□□ 0.17
RPS28-204ENST00000602140 AS3MTQ9HBK9 375 aa16.1■□□□□ 0.17
RPS28-204ENST00000602140 PALD1Q9ULE6 856 aa16.1■□□□□ 0.17
RPS28-204ENST00000602140 LOC285556D6RIA3 1793 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 H0YGN5 161 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 INHAP05111 366 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 CYP7A1P22680 504 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 GCLCP48506 637 aaPredicted RBP16.09■□□□□ 0.17
RPS28-204ENST00000602140 DYNLL1P63167 89 aaKnown RBP16.09■□□□□ 0.17
RPS28-204ENST00000602140 SH3D19Q5HYK7 790 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 FOXP4Q8IVH2 680 aaPredicted RBP16.09■□□□□ 0.17
RPS28-204ENST00000602140 PXYLP1Q8TE99 480 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 U2AF1L4Q8WU68 220 aaKnown RBP16.09■□□□□ 0.17
RPS28-204ENST00000602140 TRIM34Q9BYJ4 488 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 ASCC2Q9H1I8 757 aaPredicted RBP16.09■□□□□ 0.17
RPS28-204ENST00000602140 DNAJC18Q9H819 358 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 SAP30BPQ9UHR5 308 aaKnown RBP16.09■□□□□ 0.17
RPS28-204ENST00000602140 TAOK2Q9UL54 1235 aa16.09■□□□□ 0.17
RPS28-204ENST00000602140 COLQQ9Y215 455 aaPredicted RBP16.09■□□□□ 0.17
RPS28-204ENST00000602140 SIPA1L1O43166 1804 aa16.08■□□□□ 0.17
RPS28-204ENST00000602140 IGSF3O75054 1194 aa16.08■□□□□ 0.16
RPS28-204ENST00000602140 IDH1O75874 414 aaKnown RBP16.08■□□□□ 0.16
RPS28-204ENST00000602140 ASNSP08243 561 aa16.08■□□□□ 0.16
RPS28-204ENST00000602140 JAG1P78504 1218 aa16.08■□□□□ 0.16
RPS28-204ENST00000602140 MTMR2Q13614 643 aa16.08■□□□□ 0.16
RPS28-204ENST00000602140 CEP85Q6P2H3 762 aa16.08■□□□□ 0.16
RPS28-204ENST00000602140 UBE2Q1Q7Z7E8 422 aa16.08■□□□□ 0.16
RPS28-204ENST00000602140 METTL16Q86W50 562 aaKnown RBP16.08■□□□□ 0.16
RPS28-204ENST00000602140 DPF3Q92784 378 aa16.08■□□□□ 0.16
RPS28-204ENST00000602140 WDR18Q9BV38 432 aa16.08■□□□□ 0.16
RPS28-204ENST00000602140 MYO5AQ9Y4I1 1855 aaKnown RBP16.08■□□□□ 0.16
RPS28-204ENST00000602140 SGPL1O95470 568 aa16.07■□□□□ 0.16
RPS28-204ENST00000602140 BACE1P56817 501 aa16.07■□□□□ 0.16
RPS28-204ENST00000602140 SHROOM1Q2M3G4 852 aaPredicted RBP16.07■□□□□ 0.16
RPS28-204ENST00000602140 MIGA1Q8NAN2 632 aa16.07■□□□□ 0.16
RPS28-204ENST00000602140 TMOD4Q9NZQ9 345 aa16.07■□□□□ 0.16
RPS28-204ENST00000602140 EXOC6BQ9Y2D4 811 aa16.07■□□□□ 0.16
RPS28-204ENST00000602140 NDUFB9Q9Y6M9 179 aa16.07■□□□□ 0.16
RPS28-204ENST00000602140 GDF11O95390 407 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms