RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	WDR19	Q8NEZ3	1342 aa		13.71	□□□□□ -0.22
VRK3-223	ENST00000601341	WDHD1	O75717	1129 aa	Predicted RBP	13.71	□□□□□ -0.22
VRK3-223	ENST00000601341	CFAP100	Q494V2	611 aa		13.71	□□□□□ -0.22
VRK3-223	ENST00000601341	C12orf60	Q5U649	245 aa		13.71	□□□□□ -0.22
VRK3-223	ENST00000601341	NOL8	Q76FK4	1167 aa	Known RBP	13.71	□□□□□ -0.22
VRK3-223	ENST00000601341	FAM184A	Q8NB25	1140 aa		13.71	□□□□□ -0.22
VRK3-223	ENST00000601341	TCEANC2	Q96MN5	208 aa		13.71	□□□□□ -0.22
VRK3-223	ENST00000601341	CYP2D7	A0A087X1C5	515 aa		13.7	□□□□□ -0.22
VRK3-223	ENST00000601341	POLR3D	P05423	398 aa	Predicted RBP	13.7	□□□□□ -0.22
VRK3-223	ENST00000601341		Q6ZUG5	572 aa		13.7	□□□□□ -0.22
VRK3-223	ENST00000601341	FBXL16	Q8N461	479 aa		13.7	□□□□□ -0.22
VRK3-223	ENST00000601341	TOMM22	Q9NS69	142 aa		13.7	□□□□□ -0.22
VRK3-223	ENST00000601341	ZNF646	O15015	1829 aa	Predicted RBP	13.7	□□□□□ -0.22
VRK3-223	ENST00000601341	NEDD4	P46934	1319 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341		B4E1Z4	1266 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	PRC1	O43663	620 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	FGR	P09769	529 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	YBX3	P16989	372 aa	Known RBP eCLIP	13.69	□□□□□ -0.22	4e-7	■■□□□ 11.9
VRK3-223	ENST00000601341	PDC	P20941	246 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	SYT1	P21579	422 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	PDE4B	Q07343	736 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	TOB2	Q14106	344 aa	Predicted RBP	13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	DLGAP5	Q15398	846 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	AGXT2	Q9BYV1	514 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	INCENP	Q9NQS7	918 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	PSME4	Q14997	1843 aa		13.69	□□□□□ -0.22
VRK3-223	ENST00000601341	KDM4A	O75164	1064 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	F13A1	P00488	732 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	CYP2D6	P10635	497 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	NT5C2	P49902	561 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	UBE2H	P62256	183 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	PICALM	Q13492	652 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	RRP12	Q5JTH9	1297 aa	Known RBP	13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	CHST3	Q7LGC8	479 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	ZSCAN30	Q86W11	494 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	STK11IP	Q8N1F8	1099 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	MTMR14	Q8NCE2	650 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	ESR2	Q92731	530 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	DPF2	Q92785	391 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	PRMT6	Q96LA8	375 aa	Predicted RBP	13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	IDI2	Q9BXS1	227 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	SAP30BP	Q9UHR5	308 aa	Known RBP	13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	PCDHAC2	Q9Y5I4	1007 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	TACC3	Q9Y6A5	838 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	SPDYE2B	A6NHP3	402 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	ORC4	O43929	436 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	NPM3	O75607	178 aa	Known RBP	13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	SPDYE6	P0CI01	402 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	ANTXR2	P58335	489 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	TTC6	Q86TZ1	520 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	BRF1	Q92994	677 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	TMEM87B	Q96K49	555 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	LARP6	Q9BRS8	491 aa	Known RBP	13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	MTA3	Q9BTC8	594 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	LRRC2	Q9BYS8	371 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	RBSN	Q9H1K0	784 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	ZNF287	Q9HBT7	754 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	ZSWIM5	Q9P217	1185 aa		13.68	□□□□□ -0.22
VRK3-223	ENST00000601341	LAMA4	Q16363	1823 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	TCHH	Q07283	1943 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	TIAM2	Q8IVF5	1701 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	SMIM22	K7EJ46	135 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	PLCD1	P51178	756 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	UVSSA	Q2YD98	709 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	CYB5R4	Q7L1T6	521 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	USP48	Q86UV5	1035 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	TDRD3	Q9H7E2	651 aa	Known RBP	13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	DDX4	Q9NQI0	724 aa	Known RBP	13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	TMOD2	Q9NZR1	351 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	TPCN1	Q9ULQ1	816 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	GJA3	Q9Y6H8	435 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	ROBO3	Q96MS0	1386 aa		13.67	□□□□□ -0.22
VRK3-223	ENST00000601341	GMPS	P49915	693 aa	Predicted RBP	13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	ZNF280A	P59817	542 aa	Predicted RBP	13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	NFIA	Q12857	509 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	SART3	Q15020	963 aa	Known RBP	13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	SLC4A8	Q2Y0W8	1093 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	ZNF541	Q9H0D2	1346 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	SYCE3	A1L190	88 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	MYO1B	O43795	1136 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	RANBP6	O60518	1105 aa	Known RBP	13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	PRDM1	O75626	825 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	EVX2	Q03828	476 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	GPR162	Q16538	588 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	ME3	Q16798	604 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	CCDC183	Q5T5S1	534 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	DHX36	Q9H2U1	1008 aa	Known RBP	13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	TSPY26P	Q9H489	355 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	MKNK2	Q9HBH9	465 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	MYOZ2	Q9NPC6	264 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	RNF181	Q9P0P0	153 aa		13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	ANGEL1	Q9UNK9	670 aa	Known RBP	13.66	□□□□□ -0.22
VRK3-223	ENST00000601341	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.65	□□□□□ -0.22
VRK3-223	ENST00000601341	ERICH2	A1L162	156 aa		13.65	□□□□□ -0.22
VRK3-223	ENST00000601341	IFIT3	O14879	490 aa	Known RBP	13.65	□□□□□ -0.22
VRK3-223	ENST00000601341	ENTPD3	O75355	529 aa		13.65	□□□□□ -0.22
VRK3-223	ENST00000601341	HLA-DOA	P06340	250 aa		13.65	□□□□□ -0.22
VRK3-223	ENST00000601341	GJB2	P29033	226 aa		13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms