RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FAM110CQ1W6H9 321 aa15.43■□□□□ 0.06
TRIM28-212ENST00000597995 COA7Q96BR5 231 aa15.43■□□□□ 0.06
TRIM28-212ENST00000597995 NSUN4Q96CB9 384 aaKnown RBP15.43■□□□□ 0.06
TRIM28-212ENST00000597995 NEUROD6Q96NK8 337 aa15.43■□□□□ 0.06
TRIM28-212ENST00000597995 ELNP15502 786 aa15.42■□□□□ 0.06
TRIM28-212ENST00000597995 ARID4AP29374 1257 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-212ENST00000597995 GCLCP48506 637 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-212ENST00000597995 SPP2Q13103 211 aa15.42■□□□□ 0.06
TRIM28-212ENST00000597995 GORABQ5T7V8 394 aa15.42■□□□□ 0.06
TRIM28-212ENST00000597995 ATF7IPQ6VMQ6 1270 aa15.42■□□□□ 0.06
TRIM28-212ENST00000597995 ANKRD13CQ8N6S4 541 aa15.42■□□□□ 0.06
TRIM28-212ENST00000597995 ZNF280CQ8ND82 737 aa15.42■□□□□ 0.06
TRIM28-212ENST00000597995 FRAT1Q92837 279 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-212ENST00000597995 PRO3102Q9H379 93 aa15.42■□□□□ 0.06
TRIM28-212ENST00000597995 RBM27Q9P2N5 1060 aaKnown RBP15.42■□□□□ 0.06
TRIM28-212ENST00000597995 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-212ENST00000597995 DOCK3Q8IZD9 2030 aa15.41■□□□□ 0.06
TRIM28-212ENST00000597995 IPO8O15397 1037 aaKnown RBP15.41■□□□□ 0.06
TRIM28-212ENST00000597995 TFRCP02786 760 aaKnown RBP15.41■□□□□ 0.06
TRIM28-212ENST00000597995 UQCRFS1P1P0C7P4 283 aa15.41■□□□□ 0.06
TRIM28-212ENST00000597995 CAP2P40123 477 aa15.41■□□□□ 0.06
TRIM28-212ENST00000597995 PABPC4Q13310 644 aaKnown RBP eCLIP15.41■□□□□ 0.06
TRIM28-212ENST00000597995 TREML2Q5T2D2 321 aa15.41■□□□□ 0.06
TRIM28-212ENST00000597995 TBC1D9Q6ZT07 1266 aa15.41■□□□□ 0.06
TRIM28-212ENST00000597995 CCDC84Q86UT8 332 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-212ENST00000597995 CLUAP1Q96AJ1 413 aa15.41■□□□□ 0.06
TRIM28-212ENST00000597995 PAK6Q9NQU5 681 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-212ENST00000597995 RAI14Q9P0K7 980 aa15.41■□□□□ 0.06
TRIM28-212ENST00000597995 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-212ENST00000597995 HERC5Q9UII4 1024 aaKnown RBP15.41■□□□□ 0.06
TRIM28-212ENST00000597995 ZBED9Q6R2W3 1325 aa15.41■□□□□ 0.06
TRIM28-212ENST00000597995 FAM196BA6NMK8 535 aa15.4■□□□□ 0.06
TRIM28-212ENST00000597995 USP17L5A8MUK1 530 aa15.4■□□□□ 0.06
TRIM28-212ENST00000597995 ZBTB7BO15156 539 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-212ENST00000597995 GNAI2P04899 355 aa15.4■□□□□ 0.06
TRIM28-212ENST00000597995 G3BP1Q13283 466 aaKnown RBP eCLIP15.4■□□□□ 0.063e-9■■■□□ 16.4
TRIM28-212ENST00000597995 SH3D19Q5HYK7 790 aa15.4■□□□□ 0.06
TRIM28-212ENST00000597995 PI16Q6UXB8 463 aa15.4■□□□□ 0.06
TRIM28-212ENST00000597995 DEFB118Q96PH6 123 aa15.4■□□□□ 0.06
TRIM28-212ENST00000597995 CRISPLD2Q9H0B8 497 aa15.4■□□□□ 0.06
TRIM28-212ENST00000597995 RANBP2P49792 3224 aaKnown RBP15.39■□□□□ 0.05
TRIM28-212ENST00000597995 IGSF3O75054 1194 aa15.39■□□□□ 0.05
TRIM28-212ENST00000597995 TEX11Q8IYF3 940 aa15.39■□□□□ 0.05
TRIM28-212ENST00000597995 NOL10Q9BSC4 688 aaKnown RBP15.39■□□□□ 0.05
TRIM28-212ENST00000597995 DHX36Q9H2U1 1008 aaKnown RBP15.39■□□□□ 0.05
TRIM28-212ENST00000597995 AS3MTQ9HBK9 375 aa15.39■□□□□ 0.05
TRIM28-212ENST00000597995 LRP2BPQ9P2M1 347 aa15.39■□□□□ 0.05
TRIM28-212ENST00000597995 PI4KBQ9UBF8 816 aa15.39■□□□□ 0.05
TRIM28-212ENST00000597995 A0A1W2PPC1 479 aa15.38■□□□□ 0.05
TRIM28-212ENST00000597995 EVI5O60447 810 aa15.38■□□□□ 0.05
TRIM28-212ENST00000597995 BAG3O95817 575 aa15.38■□□□□ 0.05
TRIM28-212ENST00000597995 MCAMP43121 646 aa15.38■□□□□ 0.05
TRIM28-212ENST00000597995 HMGCS2P54868 508 aa15.38■□□□□ 0.05
TRIM28-212ENST00000597995 RRP1BQ14684 758 aaKnown RBP15.38■□□□□ 0.05
TRIM28-212ENST00000597995 TMEM57Q8N5G2 664 aa15.38■□□□□ 0.05
TRIM28-212ENST00000597995 WDR18Q9BV38 432 aa15.38■□□□□ 0.05
TRIM28-212ENST00000597995 ASCC2Q9H1I8 757 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-212ENST00000597995 GPR108Q9NPR9 543 aa15.38■□□□□ 0.05
TRIM28-212ENST00000597995 LOC285556D6RIA3 1793 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 PNMA6EA0A0J9YXQ4 647 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 PLCG2P16885 1265 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 PPP4CP60510 307 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 ZKSCAN2Q63HK3 967 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 FOXP4Q8IVH2 680 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-212ENST00000597995 ANKLE1Q8NAG6 615 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 SH3RF3Q8TEJ3 882 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-212ENST00000597995 GINM1Q9NU53 330 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 MORF4L1Q9UBU8 362 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 GJD2Q9UKL4 321 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 TAOK2Q9UL54 1235 aa15.37■□□□□ 0.05
TRIM28-212ENST00000597995 HMGCRP04035 888 aa15.36■□□□□ 0.05
TRIM28-212ENST00000597995 ASNSP08243 561 aa15.36■□□□□ 0.05
TRIM28-212ENST00000597995 RLBP1P12271 317 aa15.36■□□□□ 0.05
TRIM28-212ENST00000597995 HOXA7P31268 230 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-212ENST00000597995 NAA16Q6N069 864 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-212ENST00000597995 NECAB2Q7Z6G3 386 aa15.36■□□□□ 0.05
TRIM28-212ENST00000597995 METTL16Q86W50 562 aaKnown RBP15.36■□□□□ 0.05
TRIM28-212ENST00000597995 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.36■□□□□ 0.053e-10■■■□□ 16.3
TRIM28-212ENST00000597995 SZT2Q5T011 3432 aa15.36■□□□□ 0.05
TRIM28-212ENST00000597995 C19orf81C9J6K1 198 aa15.35■□□□□ 0.05
TRIM28-212ENST00000597995 BACE1P56817 501 aa15.35■□□□□ 0.05
TRIM28-212ENST00000597995 CCDC158Q5M9N0 1113 aa15.35■□□□□ 0.05
TRIM28-212ENST00000597995 PAWRQ96IZ0 340 aaKnown RBP15.35■□□□□ 0.05
TRIM28-212ENST00000597995 ZNF512BQ96KM6 892 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-212ENST00000597995 HMX1Q9NP08 348 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-212ENST00000597995 AATFQ9NY61 560 aaKnown RBP eCLIP15.35■□□□□ 0.052e-7■■■■□ 21.7
TRIM28-212ENST00000597995 ATAD5Q96QE3 1844 aa15.35■□□□□ 0.05
TRIM28-212ENST00000597995 RPTORQ8N122 1335 aa15.35■□□□□ 0.05
TRIM28-212ENST00000597995 IRX3P78415 501 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-212ENST00000597995 POLA2Q14181 598 aa15.34■□□□□ 0.05
TRIM28-212ENST00000597995 TNNI3KQ59H18 835 aa15.34■□□□□ 0.05
TRIM28-212ENST00000597995 TTC39AQ5SRH9 613 aa15.34■□□□□ 0.05
TRIM28-212ENST00000597995 TMOD4Q9NZQ9 345 aa15.34■□□□□ 0.05
TRIM28-212ENST00000597995 FPGT-TNNI3KV9GXZ4 949 aa15.34■□□□□ 0.05
TRIM28-212ENST00000597995 MTMR2Q13614 643 aa15.33■□□□□ 0.04
TRIM28-212ENST00000597995 TGFBRAP1Q8WUH2 860 aa15.33■□□□□ 0.04
TRIM28-212ENST00000597995 SNRKQ9NRH2 765 aa15.33■□□□□ 0.04
TRIM28-212ENST00000597995 USP17L10C9JJH3 530 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 CYP2E1P05181 493 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-212ENST00000597995 XRCC5P13010 732 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms