RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 WNT10BO00744 389 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 PRC1O43663 620 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 CACNB3P54284 484 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 GABPAQ06546 454 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 ANKRD1Q15327 319 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 C16orf86Q6ZW13 317 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 TTC6Q86TZ1 520 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 DYNLL2Q96FJ2 89 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 TMX3Q96JJ7 454 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 MTA3Q9BTC8 594 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 GPRC5DQ9NZD1 345 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 LIMCH1Q9UPQ0 1083 aa17.41■□□□□ 0.38
SHKBP1-211ENST00000595945 KDM4AO75164 1064 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 EVCP57679 992 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 PDE4BQ07343 736 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 CUL4AQ13619 759 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 SH3BP5LQ7L8J4 393 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 LRRC2Q9BYS8 371 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 DHX36Q9H2U1 1008 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 TMOD2Q9NZR1 351 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 ZSWIM5Q9P217 1185 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 SRCAPQ6ZRS2 3230 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 CNTNAP1P78357 1384 aa17.4■□□□□ 0.38
SHKBP1-211ENST00000595945 SH2B2O14492 632 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 EGFRP00533 1210 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 SLC4A8Q2Y0W8 1093 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 NBPF9Q3BBW0 867 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 CHST3Q7LGC8 479 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 STK11IPQ8N1F8 1099 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 IGDCC4Q8TDY8 1250 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 ESR2Q92731 530 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 TMEM87BQ96K49 555 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 ZSCAN31Q96LW9 406 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 EHD4Q9H223 541 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 TAOK2Q9UL54 1235 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 TPCN1Q9ULQ1 816 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 SCN4AP35499 1836 aa17.39■□□□□ 0.37
SHKBP1-211ENST00000595945 CLRN2A0PK11 232 aa17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 DDTLA6NHG4 134 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 PRDM1O75626 825 aa17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 DDNO94850 711 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 CDK8P49336 464 aa17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 KIF4BQ2VIQ3 1234 aa17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 RRP12Q5JTH9 1297 aaKnown RBP17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 SAMD7Q7Z3H4 446 aa17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 FAM83AQ86UY5 434 aa17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 FAM151AQ8WW52 585 aa17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 BRF1Q92994 677 aa17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 GPHNQ9NQX3 736 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-211ENST00000595945 H7C1D1 291 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 MYO1BO43795 1136 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 LARGE1O95461 756 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 HLA-DOAP06340 250 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 RASA1P20936 1047 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 TCP10Q12799 353 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 TBC1D10BQ4KMP7 808 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 NOL8Q76FK4 1167 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 METTL16Q86W50 562 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 SLC44A5Q8NCS7 719 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 L3MBTL3Q96JM7 780 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 LARP6Q9BRS8 491 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 SH2B1Q9NRF2 756 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 TOMM22Q9NS69 142 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 DAXXQ9UER7 740 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 PGAP2Q9UHJ9 254 aa17.37■□□□□ 0.37
SHKBP1-211ENST00000595945 WDR90Q96KV7 1748 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 TCP10L2B9ZVM9 353 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 EPS15P42566 896 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 SEC23AQ15436 765 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 ME3Q16798 604 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 RBM26Q5T8P6 1007 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 SGMS1Q86VZ5 419 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 TRPM4Q8TD43 1214 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 ZNF287Q9HBT7 754 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 SERPINB13Q9UIV8 391 aa17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 ANGEL1Q9UNK9 670 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-211ENST00000595945 RANBP6O60518 1105 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 LIFRP42702 1097 aa17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 APOBRQ0VD83 1088 aa17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 ST3GAL1Q11201 340 aa17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 FOXP4Q8IVH2 680 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 DNAJC18Q9H819 358 aa17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 LY9Q9HBG7 655 aa17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 PI4KBQ9UBF8 816 aa17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 SWAP70Q9UH65 585 aa17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 PLIN4Q96Q06 1357 aa17.35■□□□□ 0.37
SHKBP1-211ENST00000595945 IFIT3O14879 490 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 ASTN2O75129 1339 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 SHMT1P34896 483 aa17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 FGD1P98174 961 aa17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 ZNF274Q96GC6 653 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 INTS4Q96HW7 963 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 ZSCAN10Q96SZ4 725 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 MKNK2Q9HBH9 465 aa17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 VEZTQ9HBM0 779 aa17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 SENP2Q9HC62 589 aa17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 TCP11L1Q9NUJ3 509 aa17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 BRPF3Q9ULD4 1205 aa17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 MYH4Q9Y623 1939 aa17.34■□□□□ 0.37
SHKBP1-211ENST00000595945 TNKSO95271 1327 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms