RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 USP40Q9NVE5 1235 aa15.55■□□□□ 0.08
VRK3-205ENST00000593919 SAP30BPQ9UHR5 308 aaKnown RBP15.55■□□□□ 0.08
VRK3-205ENST00000593919 ZBTB12Q9Y330 459 aaPredicted RBP15.55■□□□□ 0.08
VRK3-205ENST00000593919 MYH8P13535 1937 aa15.55■□□□□ 0.08
VRK3-205ENST00000593919 ROBO3Q96MS0 1386 aa15.55■□□□□ 0.08
VRK3-205ENST00000593919 WDHD1O75717 1129 aaPredicted RBP15.55■□□□□ 0.08
VRK3-205ENST00000593919 FGRP09769 529 aa15.55■□□□□ 0.08
VRK3-205ENST00000593919 PCP11498 1178 aaKnown RBP15.55■□□□□ 0.08
VRK3-205ENST00000593919 STK3Q13188 491 aa15.55■□□□□ 0.08
VRK3-205ENST00000593919 SYT17Q9BSW7 474 aa15.55■□□□□ 0.08
VRK3-205ENST00000593919 PRDM1O75626 825 aa15.54■□□□□ 0.08
VRK3-205ENST00000593919 PICALMQ13492 652 aa15.54■□□□□ 0.08
VRK3-205ENST00000593919 L1TD1Q5T7N2 865 aaKnown RBP15.54■□□□□ 0.08
VRK3-205ENST00000593919 MCTP1Q6DN14 999 aa15.54■□□□□ 0.08
VRK3-205ENST00000593919 AMOTL1Q8IY63 956 aa15.54■□□□□ 0.08
VRK3-205ENST00000593919 DDX4Q9NQI0 724 aaKnown RBP15.54■□□□□ 0.08
VRK3-205ENST00000593919 ANGEL1Q9UNK9 670 aaKnown RBP15.54■□□□□ 0.08
VRK3-205ENST00000593919 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.54■□□□□ 0.08
VRK3-205ENST00000593919 GOLGA6L3A6NEY3 463 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 POLR3DP05423 398 aaPredicted RBP15.53■□□□□ 0.08
VRK3-205ENST00000593919 SLC3A2P08195 630 aaKnown RBP15.53■□□□□ 0.08
VRK3-205ENST00000593919 PLCD1P51178 756 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 SKOR2Q2VWA4 1001 aaPredicted RBP15.53■□□□□ 0.08
VRK3-205ENST00000593919 CIAPIN1Q6FI81 312 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 ESR2Q92731 530 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 TMEM87BQ96K49 555 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 SH2B2O14492 632 aaPredicted RBP15.53■□□□□ 0.08
VRK3-205ENST00000593919 ORC4O43929 436 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 PDE4BQ07343 736 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 CFAP100Q494V2 611 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 AGBL3Q8NEM8 1001 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 IGDCC4Q8TDY8 1250 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 GTF3C6Q969F1 213 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 ZDHHC9Q9Y397 364 aa15.53■□□□□ 0.08
VRK3-205ENST00000593919 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.53■□□□□ 0.08
VRK3-205ENST00000593919 RANBP6O60518 1105 aaKnown RBP15.52■□□□□ 0.07
VRK3-205ENST00000593919 EVCP57679 992 aa15.52■□□□□ 0.07
VRK3-205ENST00000593919 NFIAQ12857 509 aa15.52■□□□□ 0.07
VRK3-205ENST00000593919 FOXD4L5Q5VV16 416 aaPredicted RBP15.52■□□□□ 0.07
VRK3-205ENST00000593919 FOXD4L4Q8WXT5 416 aaPredicted RBP15.52■□□□□ 0.07
VRK3-205ENST00000593919 DYNLL2Q96FJ2 89 aa15.52■□□□□ 0.07
VRK3-205ENST00000593919 ZKSCAN3Q9BRR0 538 aa15.52■□□□□ 0.07
VRK3-205ENST00000593919 PDIA3P30101 505 aaKnown RBP15.51■□□□□ 0.07
VRK3-205ENST00000593919 CACNB3P54284 484 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 SCRN1Q12765 414 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 TMEM67Q5HYA8 995 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 OGFOD1Q8N543 542 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 ZNF274Q96GC6 653 aaPredicted RBP15.51■□□□□ 0.07
VRK3-205ENST00000593919 LY9Q9HBG7 655 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 SENP2Q9HC62 589 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 HDAC9Q9UKV0 1011 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 NAP1L2Q9ULW6 460 aaPredicted RBP15.51■□□□□ 0.07
VRK3-205ENST00000593919 KLF18A0A0U1RQI7 1052 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 IFIT3O14879 490 aaKnown RBP15.51■□□□□ 0.07
VRK3-205ENST00000593919 PFKFB2O60825 505 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 DTNBO60941 627 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 ARHGAP27Q6ZUM4 889 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 PRMT6Q96LA8 375 aaPredicted RBP15.51■□□□□ 0.07
VRK3-205ENST00000593919 OSBPL5Q9H0X9 879 aaPredicted RBP15.51■□□□□ 0.07
VRK3-205ENST00000593919 SIPA1L1O43166 1804 aa15.51■□□□□ 0.07
VRK3-205ENST00000593919 FSD2A1L4K1 749 aa15.5■□□□□ 0.07
VRK3-205ENST00000593919 FZD9O00144 591 aa15.5■□□□□ 0.07
VRK3-205ENST00000593919 SART3Q15020 963 aaKnown RBP15.5■□□□□ 0.07
VRK3-205ENST00000593919 TNIP1Q15025 636 aa15.5■□□□□ 0.07
VRK3-205ENST00000593919 SLC44A5Q8NCS7 719 aa15.5■□□□□ 0.07
VRK3-205ENST00000593919 UBAC1Q9BSL1 405 aa15.5■□□□□ 0.07
VRK3-205ENST00000593919 MTA3Q9BTC8 594 aa15.5■□□□□ 0.07
VRK3-205ENST00000593919 TDRD3Q9H7E2 651 aaKnown RBP15.5■□□□□ 0.07
VRK3-205ENST00000593919 SMC3Q9UQE7 1217 aa15.5■□□□□ 0.07
VRK3-205ENST00000593919 SPDYE2BA6NHP3 402 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 GOLGA8BA8MQT2 603 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 SPDYE6P0CI01 402 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 LIFRP42702 1097 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 CCT2P78371 535 aaKnown RBP15.49■□□□□ 0.07
VRK3-205ENST00000593919 SGMS1Q86VZ5 419 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 IDI2Q9BXS1 227 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 ERICH2A1L162 156 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 FAM47AQ5JRC9 791 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 APOA5Q6Q788 366 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 C16orf86Q6ZW13 317 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 NCOA5Q9HCD5 579 aaKnown RBP15.49■□□□□ 0.07
VRK3-205ENST00000593919 FAM198AQ9UFP1 575 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 HPS5Q9UPZ3 1129 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 DDX49Q9Y6V7 483 aaKnown RBP15.49■□□□□ 0.07
VRK3-205ENST00000593919 TNKSO95271 1327 aa15.49■□□□□ 0.07
VRK3-205ENST00000593919 GJB2P29033 226 aa15.48■□□□□ 0.07
VRK3-205ENST00000593919 EIF6P56537 245 aaKnown RBP15.48■□□□□ 0.07
VRK3-205ENST00000593919 TCP10Q12799 353 aa15.48■□□□□ 0.07
VRK3-205ENST00000593919 WTAPQ15007 396 aa15.48■□□□□ 0.07
VRK3-205ENST00000593919 DLGAP5Q15398 846 aa15.48■□□□□ 0.07
VRK3-205ENST00000593919 NFXL1Q6ZNB6 911 aa15.48■□□□□ 0.07
VRK3-205ENST00000593919 IQCA1Q86XH1 822 aa15.48■□□□□ 0.07
VRK3-205ENST00000593919 RAB11FIP4Q86YS3 637 aa15.48■□□□□ 0.07
VRK3-205ENST00000593919 ENAHQ8N8S7 591 aaPredicted RBP15.48■□□□□ 0.07
VRK3-205ENST00000593919 MKNK2Q9HBH9 465 aa15.48■□□□□ 0.07
VRK3-205ENST00000593919 SHTN1A0MZ66 631 aa15.47■□□□□ 0.07
VRK3-205ENST00000593919 TSPY2A6NKD2 308 aa15.47■□□□□ 0.07
VRK3-205ENST00000593919 YBX3P16989 372 aaKnown RBP eCLIP15.47■□□□□ 0.074e-7■■□□□ 11.9
VRK3-205ENST00000593919 LMNB1P20700 586 aa15.47■□□□□ 0.07
VRK3-205ENST00000593919 CDK8P49336 464 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 464 ms