RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 AGTPBP1Q9UPW5 1226 aa18.16■□□□□ 0.5
PNKP-202ENST00000593706 PLXNB2O15031 1838 aa18.16■□□□□ 0.5
PNKP-202ENST00000593706 FLT3LGP49771 235 aa18.15■□□□□ 0.5
PNKP-202ENST00000593706 RHBDL3P58872 404 aa18.15■□□□□ 0.5
PNKP-202ENST00000593706 CHRDL2Q6WN34 429 aa18.15■□□□□ 0.5
PNKP-202ENST00000593706 ZNF384Q8TF68 577 aa18.15■□□□□ 0.5
PNKP-202ENST00000593706 UNC93B1Q9H1C4 597 aa18.15■□□□□ 0.5
PNKP-202ENST00000593706 TNNQ9UQP3 1299 aa18.15■□□□□ 0.5
PNKP-202ENST00000593706 IPO8O15397 1037 aaKnown RBP18.14■□□□□ 0.49
PNKP-202ENST00000593706 FARP2O94887 1054 aaPredicted RBP18.14■□□□□ 0.49
PNKP-202ENST00000593706 GNAI2P04899 355 aa18.14■□□□□ 0.49
PNKP-202ENST00000593706 ELNP15502 786 aa18.14■□□□□ 0.49
PNKP-202ENST00000593706 TBC1D9Q6ZT07 1266 aa18.14■□□□□ 0.49
PNKP-202ENST00000593706 ANKRD13CQ8N6S4 541 aa18.14■□□□□ 0.49
PNKP-202ENST00000593706 U2AF1L4Q8WU68 220 aaKnown RBP18.14■□□□□ 0.49
PNKP-202ENST00000593706 FRAT1Q92837 279 aaPredicted RBP18.14■□□□□ 0.49
PNKP-202ENST00000593706 NSUN4Q96CB9 384 aaKnown RBP18.14■□□□□ 0.49
PNKP-202ENST00000593706 NOL10Q9BSC4 688 aaKnown RBP18.14■□□□□ 0.49
PNKP-202ENST00000593706 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.14■□□□□ 0.49
PNKP-202ENST00000593706 TBC1D12O60347 775 aa18.13■□□□□ 0.49
PNKP-202ENST00000593706 NPM3O75607 178 aaKnown RBP18.13■□□□□ 0.49
PNKP-202ENST00000593706 MAP4K4O95819 1239 aaPredicted RBP18.13■□□□□ 0.49
PNKP-202ENST00000593706 INHAP05111 366 aa18.13■□□□□ 0.49
PNKP-202ENST00000593706 ARID4AP29374 1257 aaPredicted RBP18.13■□□□□ 0.49
PNKP-202ENST00000593706 G3BP1Q13283 466 aaKnown RBP eCLIP18.13■□□□□ 0.49
PNKP-202ENST00000593706 TREML2Q5T2D2 321 aa18.13■□□□□ 0.49
PNKP-202ENST00000593706 ATF7IPQ6VMQ6 1270 aa18.13■□□□□ 0.49
PNKP-202ENST00000593706 TEX11Q8IYF3 940 aa18.13■□□□□ 0.49
PNKP-202ENST00000593706 PROCA1Q8NCQ7 364 aaPredicted RBP18.13■□□□□ 0.49
PNKP-202ENST00000593706 COA7Q96BR5 231 aa18.13■□□□□ 0.49
PNKP-202ENST00000593706 OSBPL5Q9H0X9 879 aaPredicted RBP18.13■□□□□ 0.49
PNKP-202ENST00000593706 LRP2BPQ9P2M1 347 aa18.13■□□□□ 0.49
PNKP-202ENST00000593706 MYH8P13535 1937 aa18.13■□□□□ 0.49
PNKP-202ENST00000593706 DDX60LQ5H9U9 1706 aaKnown RBP18.12■□□□□ 0.49
PNKP-202ENST00000593706 FAM110CQ1W6H9 321 aa18.12■□□□□ 0.49
PNKP-202ENST00000593706 PNMA6EA0A0J9YXQ4 647 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 UQCRFS1P1P0C7P4 283 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 MCAMP43121 646 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 HMGCS2P54868 508 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 SPP2Q13103 211 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 PABPC4Q13310 644 aaKnown RBP eCLIP18.11■□□□□ 0.49
PNKP-202ENST00000593706 IRF5Q13568 498 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 UBE2Q1Q7Z7E8 422 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 ZNF280CQ8ND82 737 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 PXYLP1Q8TE99 480 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 CLUAP1Q96AJ1 413 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 TBC1D2Q9BYX2 928 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 NR2E3Q9Y5X4 410 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 FRMPD3Q5JV73 1810 aa18.11■□□□□ 0.49
PNKP-202ENST00000593706 NAV1Q8NEY1 1877 aa18.1■□□□□ 0.49
PNKP-202ENST00000593706 SGPL1O95470 568 aa18.1■□□□□ 0.49
PNKP-202ENST00000593706 OS9Q13438 667 aaPredicted RBP18.1■□□□□ 0.49
PNKP-202ENST00000593706 SH3RF3Q8TEJ3 882 aaPredicted RBP18.1■□□□□ 0.49
PNKP-202ENST00000593706 DEFB118Q96PH6 123 aa18.1■□□□□ 0.49
PNKP-202ENST00000593706 TFRCP02786 760 aaKnown RBP18.09■□□□□ 0.49
PNKP-202ENST00000593706 CAP2P40123 477 aa18.09■□□□□ 0.49
PNKP-202ENST00000593706 TTC39AQ5SRH9 613 aa18.09■□□□□ 0.49
PNKP-202ENST00000593706 NAA16Q6N069 864 aaPredicted RBP18.09■□□□□ 0.49
PNKP-202ENST00000593706 TRIM34Q9BYJ4 488 aa18.09■□□□□ 0.49
PNKP-202ENST00000593706 AS3MTQ9HBK9 375 aa18.09■□□□□ 0.49
PNKP-202ENST00000593706 AATFQ9NY61 560 aaKnown RBP eCLIP18.09■□□□□ 0.49
PNKP-202ENST00000593706 HERC5Q9UII4 1024 aaKnown RBP18.09■□□□□ 0.49
PNKP-202ENST00000593706 USP17L5A8MUK1 530 aa18.08■□□□□ 0.48
PNKP-202ENST00000593706 BAG3O95817 575 aa18.08■□□□□ 0.48
PNKP-202ENST00000593706 GCLCP48506 637 aaPredicted RBP18.08■□□□□ 0.48
PNKP-202ENST00000593706 SNRKQ9NRH2 765 aa18.08■□□□□ 0.48
PNKP-202ENST00000593706 RBM27Q9P2N5 1060 aaKnown RBP18.08■□□□□ 0.48
PNKP-202ENST00000593706 EVI5O60447 810 aa18.07■□□□□ 0.48
PNKP-202ENST00000593706 PLCG2P16885 1265 aa18.07■□□□□ 0.48
PNKP-202ENST00000593706 CCDC158Q5M9N0 1113 aa18.07■□□□□ 0.48
PNKP-202ENST00000593706 ASCC2Q9H1I8 757 aaPredicted RBP18.07■□□□□ 0.48
PNKP-202ENST00000593706 PI4KBQ9UBF8 816 aa18.07■□□□□ 0.48
PNKP-202ENST00000593706 DNAH12Q6ZR08 3092 aa18.07■□□□□ 0.48
PNKP-202ENST00000593706 IRX3P78415 501 aaPredicted RBP18.06■□□□□ 0.48
PNKP-202ENST00000593706 RRP1BQ14684 758 aaKnown RBP18.06■□□□□ 0.48
PNKP-202ENST00000593706 ZKSCAN2Q63HK3 967 aa18.06■□□□□ 0.48
PNKP-202ENST00000593706 CRACR2BQ8N4Y2 399 aaPredicted RBP18.06■□□□□ 0.48
PNKP-202ENST00000593706 TMEM57Q8N5G2 664 aa18.06■□□□□ 0.48
PNKP-202ENST00000593706 DHX36Q9H2U1 1008 aaKnown RBP18.06■□□□□ 0.48
PNKP-202ENST00000593706 PAK6Q9NQU5 681 aaPredicted RBP18.06■□□□□ 0.48
PNKP-202ENST00000593706 COL6A3P12111 3177 aa18.06■□□□□ 0.48
PNKP-202ENST00000593706 FLT1P17948 1338 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 HMGCRP04035 888 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 ASNSP08243 561 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 CAPN2P17655 700 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 MTMR2Q13614 643 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 TNNI3KQ59H18 835 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 MAPKAPK5Q8IW41 473 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 TGFBRAP1Q8WUH2 860 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.05■□□□□ 0.48
PNKP-202ENST00000593706 TMOD4Q9NZQ9 345 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 FPGT-TNNI3KV9GXZ4 949 aa18.05■□□□□ 0.48
PNKP-202ENST00000593706 ZBTB7BO15156 539 aaPredicted RBP18.04■□□□□ 0.48
PNKP-202ENST00000593706 RLBP1P12271 317 aa18.04■□□□□ 0.48
PNKP-202ENST00000593706 SH3D19Q5HYK7 790 aa18.04■□□□□ 0.48
PNKP-202ENST00000593706 DBNDD2Q9BQY9 259 aa18.04■□□□□ 0.48
PNKP-202ENST00000593706 GPR108Q9NPR9 543 aa18.04■□□□□ 0.48
PNKP-202ENST00000593706 FTSJ3Q8IY81 847 aaKnown RBP18.03■□□□□ 0.48
PNKP-202ENST00000593706 MYH7P12883 1935 aa18.02■□□□□ 0.48
PNKP-202ENST00000593706 SURF6O75683 361 aaKnown RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms