RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CELF1Q92879 486 aaKnown RBP5.21□□□□□ -1.58
LIG3-211ENST00000588713 ZKSCAN4Q969J2 545 aaPredicted RBP5.21□□□□□ -1.58
LIG3-211ENST00000588713 CARD11Q9BXL7 1154 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 ANKIB1Q9P2G1 1089 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 KCNH4Q9UQ05 1017 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 PPP2R3BQ9Y5P8 575 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 MAP3K15Q6ZN16 1313 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 LTBP2Q14767 1821 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 OTOFQ9HC10 1997 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 ATRXP46100 2492 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 CFAP47Q6ZTR5 3102 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 GRXCR1A8MXD5 290 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 TRIM6-TRIM34B2RNG4 842 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 ERVV-1B6SEH8 477 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 IRF6O14896 467 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 BCRP11274 1271 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 EPHB4P54760 987 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 KCNC4Q03721 635 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 CAMK2BQ13554 666 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 DLGAP5Q15398 846 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 DGLUCYQ7Z3D6 616 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 ZNF34Q8IZ26 560 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 MTMR14Q8NCE2 650 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 ATOH1Q92858 354 aaPredicted RBP5.2□□□□□ -1.58
LIG3-211ENST00000588713 PKNOX2Q96KN3 472 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 MFSD14AQ96MC6 490 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 CRBNQ96SW2 442 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 PARK7Q99497 189 aaKnown RBP5.2□□□□□ -1.58
LIG3-211ENST00000588713 PBX4Q9BYU1 374 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 GGA1Q9UJY5 639 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 PCDHAC2Q9Y5I4 1007 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 KMT2BQ9UMN6 2715 aaPredicted RBP5.2□□□□□ -1.58
LIG3-211ENST00000588713 DCHS1Q96JQ0 3298 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 ZNF804BA4D1E1 1349 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 MAPK8IP3Q9UPT6 1336 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 LRRC37AA6NMS7 1700 aa5.2□□□□□ -1.58
LIG3-211ENST00000588713 SPDYE5A6NIY4 337 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 BTBD11A6QL63 1104 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 DCXO43602 365 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 MYO1BO43795 1136 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 HMOX1P09601 288 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 SNRPA1P09661 255 aaKnown RBP5.19□□□□□ -1.58
LIG3-211ENST00000588713 TCF15Q12870 199 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 BECN1Q14457 450 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 RASA3Q14644 834 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 SLC10A5Q5PT55 438 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 DACT2Q5SW24 774 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 ANKRD23Q86SG2 305 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 PACS2Q86VP3 889 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 HERVK_113Q902F9 699 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 COA7Q96BR5 231 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.19□□□□□ -1.58
LIG3-211ENST00000588713 EPG5Q9HCE0 2579 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 MYO3BQ8WXR4 1341 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 MAST2Q6P0Q8 1798 aa5.19□□□□□ -1.58
LIG3-211ENST00000588713 MAP3K7O43318 606 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 ZIC2O95409 532 aaPredicted RBP5.18□□□□□ -1.58
LIG3-211ENST00000588713 PARP10Q53GL7 1025 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 ASCL5Q7RTU5 278 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 SH3RF1Q7Z6J0 888 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 ERO1BQ86YB8 467 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.18□□□□□ -1.58
LIG3-211ENST00000588713 HLA-CQ95604 372 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 ZBED3Q96IU2 234 aaPredicted RBP5.18□□□□□ -1.58
LIG3-211ENST00000588713 CARD14Q9BXL6 1004 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 NKX2-4Q9H2Z4 354 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 BSDC1Q9NW68 430 aaPredicted RBP5.18□□□□□ -1.58
LIG3-211ENST00000588713 TSR3Q9UJK0 312 aaKnown RBP5.18□□□□□ -1.58
LIG3-211ENST00000588713 ISY1Q9ULR0 285 aaKnown RBP5.18□□□□□ -1.58
LIG3-211ENST00000588713 COG5Q9UP83 839 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 RRP7AQ9Y3A4 280 aaKnown RBP5.18□□□□□ -1.58
LIG3-211ENST00000588713 SNCAIPQ9Y6H5 919 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 SPTBN4Q9H254 2564 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 ZNF521Q96K83 1311 aa5.18□□□□□ -1.58
LIG3-211ENST00000588713 ATRNL1Q5VV63 1379 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 CEMIPQ8WUJ3 1361 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 TRIM43BA6NCK2 446 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 F8W031 263 aaPredicted RBP5.17□□□□□ -1.58
LIG3-211ENST00000588713 RRP9O43818 475 aaKnown RBP5.17□□□□□ -1.58
LIG3-211ENST00000588713 EIF5BO60841 1220 aaKnown RBP5.17□□□□□ -1.58
LIG3-211ENST00000588713 MYL6BP14649 208 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 CLCN1P35523 988 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 PPIL2Q13356 520 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 TRIM60Q495X7 471 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 IL17REQ8NFR9 667 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 TRIB2Q92519 343 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 TRIM43Q96BQ3 446 aaPredicted RBP5.17□□□□□ -1.58
LIG3-211ENST00000588713 PDLIM7Q9NR12 457 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 MSRAQ9UJ68 235 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 COL4A1P02462 1669 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 COL4A6Q14031 1691 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 MGAMO43451 1857 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 AOX1Q06278 1338 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 REV3LO60673 3130 aa5.17□□□□□ -1.58
LIG3-211ENST00000588713 NUP98P52948 1817 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 FRAT2O75474 233 aaPredicted RBP5.16□□□□□ -1.58
LIG3-211ENST00000588713 CYP2B6P20813 491 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 CCND3P30281 292 aaPredicted RBP5.16□□□□□ -1.58
LIG3-211ENST00000588713 RBM5P52756 815 aaKnown RBP eCLIP5.16□□□□□ -1.58
LIG3-211ENST00000588713 PPP4CP60510 307 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms