RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 DOCK3Q8IZD9 2030 aa23.79■■□□□ 1.4
TRAF4-216ENST00000586813 TNNI3KQ59H18 835 aa23.79■■□□□ 1.4
TRAF4-216ENST00000586813 TREML2Q5T2D2 321 aa23.79■■□□□ 1.4
TRAF4-216ENST00000586813 NKX2-3Q8TAU0 364 aa23.79■■□□□ 1.4
TRAF4-216ENST00000586813 SH3RF3Q8TEJ3 882 aaPredicted RBP23.79■■□□□ 1.4
TRAF4-216ENST00000586813 BIN2Q9UBW5 565 aaPredicted RBP23.79■■□□□ 1.4
TRAF4-216ENST00000586813 FPGT-TNNI3KV9GXZ4 949 aa23.79■■□□□ 1.4
TRAF4-216ENST00000586813 GJB1P08034 283 aa23.78■■□□□ 1.4
TRAF4-216ENST00000586813 GJA8P48165 433 aa23.78■■□□□ 1.4
TRAF4-216ENST00000586813 UBXN2AP68543 259 aa23.78■■□□□ 1.4
TRAF4-216ENST00000586813 TTC39AQ5SRH9 613 aa23.78■■□□□ 1.4
TRAF4-216ENST00000586813 PROCA1Q8NCQ7 364 aaPredicted RBP23.78■■□□□ 1.4
TRAF4-216ENST00000586813 SSH3Q8TE77 659 aa23.78■■□□□ 1.4
TRAF4-216ENST00000586813 DBNDD2Q9BQY9 259 aa23.78■■□□□ 1.4
TRAF4-216ENST00000586813 NOL10Q9BSC4 688 aaKnown RBP23.78■■□□□ 1.4
TRAF4-216ENST00000586813 SNRKQ9NRH2 765 aa23.78■■□□□ 1.4
TRAF4-216ENST00000586813 TNPO2O14787 897 aaKnown RBP23.77■■□□□ 1.4
TRAF4-216ENST00000586813 CAP2P40123 477 aa23.77■■□□□ 1.4
TRAF4-216ENST00000586813 FLT3LGP49771 235 aa23.77■■□□□ 1.4
TRAF4-216ENST00000586813 OS9Q13438 667 aaPredicted RBP23.77■■□□□ 1.4
TRAF4-216ENST00000586813 NAA16Q6N069 864 aaPredicted RBP23.77■■□□□ 1.4
TRAF4-216ENST00000586813 ZNF280CQ8ND82 737 aa23.77■■□□□ 1.4
TRAF4-216ENST00000586813 TBC1D2Q9BYX2 928 aa23.77■■□□□ 1.4
TRAF4-216ENST00000586813 RNF208Q9H0X6 261 aa23.77■■□□□ 1.4
TRAF4-216ENST00000586813 HERC5Q9UII4 1024 aaKnown RBP23.77■■□□□ 1.4
TRAF4-216ENST00000586813 PNMA3Q9UL41 463 aa23.77■■□□□ 1.4
TRAF4-216ENST00000586813 CEP290O15078 2479 aa23.76■■□□□ 1.39
TRAF4-216ENST00000586813 SPP2Q13103 211 aa23.76■■□□□ 1.39
TRAF4-216ENST00000586813 RRP1BQ14684 758 aaKnown RBP23.76■■□□□ 1.39
TRAF4-216ENST00000586813 CCDC158Q5M9N0 1113 aa23.76■■□□□ 1.39
TRAF4-216ENST00000586813 ANKRD13CQ8N6S4 541 aa23.76■■□□□ 1.39
TRAF4-216ENST00000586813 C1orf115Q9H7X2 142 aa23.76■■□□□ 1.39
TRAF4-216ENST00000586813 AATFQ9NY61 560 aaKnown RBP eCLIP23.76■■□□□ 1.39
TRAF4-216ENST00000586813 H0YGN5 161 aa23.75■■□□□ 1.39
TRAF4-216ENST00000586813 ADCY3O60266 1144 aa23.75■■□□□ 1.39
TRAF4-216ENST00000586813 BAG3O95817 575 aa23.75■■□□□ 1.39
TRAF4-216ENST00000586813 ATP8B2P98198 1209 aa23.75■■□□□ 1.39
TRAF4-216ENST00000586813 SURF6O75683 361 aaKnown RBP23.74■■□□□ 1.39
TRAF4-216ENST00000586813 CYP2E1P05181 493 aaPredicted RBP23.74■■□□□ 1.39
TRAF4-216ENST00000586813 PLCG2P16885 1265 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 HMGCS2P54868 508 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 IRF5Q13568 498 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 FAM110CQ1W6H9 321 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 UBE2Q1Q7Z7E8 422 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 ADGRA1Q86SQ6 560 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 FTSJ3Q8IY81 847 aaKnown RBP23.74■■□□□ 1.39
TRAF4-216ENST00000586813 PXYLP1Q8TE99 480 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 UNC93B1Q9H1C4 597 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 DHX36Q9H2U1 1008 aaKnown RBP23.74■■□□□ 1.39
TRAF4-216ENST00000586813 PI4KBQ9UBF8 816 aa23.74■■□□□ 1.39
TRAF4-216ENST00000586813 COLQQ9Y215 455 aaPredicted RBP23.74■■□□□ 1.39
TRAF4-216ENST00000586813 MYH1P12882 1939 aa23.73■■□□□ 1.39
TRAF4-216ENST00000586813 USP17L5A8MUK1 530 aa23.73■■□□□ 1.39
TRAF4-216ENST00000586813 ELNP15502 786 aa23.73■■□□□ 1.39
TRAF4-216ENST00000586813 ZNF512BQ96KM6 892 aaPredicted RBP23.73■■□□□ 1.39
TRAF4-216ENST00000586813 FLT1P17948 1338 aa23.73■■□□□ 1.39
TRAF4-216ENST00000586813 INHAP05111 366 aa23.72■■□□□ 1.39
TRAF4-216ENST00000586813 PPP4CP60510 307 aa23.72■■□□□ 1.39
TRAF4-216ENST00000586813 HNRNPUQ00839 825 aaKnown RBP eCLIP23.72■■□□□ 1.39
TRAF4-216ENST00000586813 PABPC4Q13310 644 aaKnown RBP eCLIP23.72■■□□□ 1.39
TRAF4-216ENST00000586813 ITPRIPQ8IWB1 547 aa23.72■■□□□ 1.39
TRAF4-216ENST00000586813 U2AF1L4Q8WU68 220 aaKnown RBP23.72■■□□□ 1.39
TRAF4-216ENST00000586813 TGFBRAP1Q8WUH2 860 aa23.72■■□□□ 1.39
TRAF4-216ENST00000586813 AS3MTQ9HBK9 375 aa23.72■■□□□ 1.39
TRAF4-216ENST00000586813 PLXNB2O15031 1838 aa23.71■■□□□ 1.39
TRAF4-216ENST00000586813 ZAP70P43403 619 aa23.71■■□□□ 1.39
TRAF4-216ENST00000586813 GCLCP48506 637 aaPredicted RBP23.71■■□□□ 1.39
TRAF4-216ENST00000586813 FXR1P51114 621 aaKnown RBP eCLIP23.71■■□□□ 1.39
TRAF4-216ENST00000586813 SH3D19Q5HYK7 790 aa23.71■■□□□ 1.39
TRAF4-216ENST00000586813 MAPKAPK5Q8IW41 473 aa23.71■■□□□ 1.39
TRAF4-216ENST00000586813 COA7Q96BR5 231 aa23.71■■□□□ 1.39
TRAF4-216ENST00000586813 DNAJC18Q9H819 358 aa23.71■■□□□ 1.39
TRAF4-216ENST00000586813 DBNLQ9UJU6 430 aaKnown RBP23.71■■□□□ 1.39
TRAF4-216ENST00000586813 NOP58Q9Y2X3 529 aaKnown RBP23.71■■□□□ 1.39
TRAF4-216ENST00000586813 IGSF3O75054 1194 aa23.7■■□□□ 1.38
TRAF4-216ENST00000586813 RLBP1P12271 317 aa23.7■■□□□ 1.38
TRAF4-216ENST00000586813 DPF3Q92784 378 aa23.7■■□□□ 1.38
TRAF4-216ENST00000586813 ASCC2Q9H1I8 757 aaPredicted RBP23.7■■□□□ 1.38
TRAF4-216ENST00000586813 PIH1D3Q9NQM4 214 aaKnown RBP23.7■■□□□ 1.38
TRAF4-216ENST00000586813 TLR7Q9NYK1 1049 aaKnown RBP23.7■■□□□ 1.38
TRAF4-216ENST00000586813 ZBTB7BO15156 539 aaPredicted RBP23.69■■□□□ 1.38
TRAF4-216ENST00000586813 SGPL1O95470 568 aa23.69■■□□□ 1.38
TRAF4-216ENST00000586813 ASNSP08243 561 aa23.69■■□□□ 1.38
TRAF4-216ENST00000586813 MTMR2Q13614 643 aa23.69■■□□□ 1.38
TRAF4-216ENST00000586813 METTL16Q86W50 562 aaKnown RBP23.69■■□□□ 1.38
TRAF4-216ENST00000586813 WDR18Q9BV38 432 aa23.69■■□□□ 1.38
TRAF4-216ENST00000586813 TAOK2Q9UL54 1235 aa23.69■■□□□ 1.38
TRAF4-216ENST00000586813 FARP2O94887 1054 aaPredicted RBP23.68■■□□□ 1.38
TRAF4-216ENST00000586813 HTATIP2Q9BUP3 242 aa23.68■■□□□ 1.38
TRAF4-216ENST00000586813 PALD1Q9ULE6 856 aa23.68■■□□□ 1.38
TRAF4-216ENST00000586813 JAG1P78504 1218 aa23.67■■□□□ 1.38
TRAF4-216ENST00000586813 FOXP4Q8IVH2 680 aaPredicted RBP23.67■■□□□ 1.38
TRAF4-216ENST00000586813 CRACR2BQ8N4Y2 399 aaPredicted RBP23.67■■□□□ 1.38
TRAF4-216ENST00000586813 EAF2Q96CJ1 260 aaPredicted RBP23.67■■□□□ 1.38
TRAF4-216ENST00000586813 TRIM34Q9BYJ4 488 aa23.67■■□□□ 1.38
TRAF4-216ENST00000586813 CCDC8Q9H0W5 538 aaPredicted RBP23.67■■□□□ 1.38
TRAF4-216ENST00000586813 PAK6Q9NQU5 681 aaPredicted RBP23.67■■□□□ 1.38
TRAF4-216ENST00000586813 BACE1P56817 501 aa23.66■■□□□ 1.38
TRAF4-216ENST00000586813 SAP30BPQ9UHR5 308 aaKnown RBP23.66■■□□□ 1.38
TRAF4-216ENST00000586813 DDX60LQ5H9U9 1706 aaKnown RBP23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms