RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 DCAF8Q5TAQ9 597 aa12.23□□□□□ -0.45
LIG3-203ENST00000585370 RSBN1LQ6PCB5 846 aaPredicted RBP12.23□□□□□ -0.45
LIG3-203ENST00000585370 TXNRD3Q86VQ6 643 aa12.23□□□□□ -0.45
LIG3-203ENST00000585370 DZIP1Q86YF9 867 aaKnown RBP12.23□□□□□ -0.45
LIG3-203ENST00000585370 CCDC83Q8IWF9 413 aa12.23□□□□□ -0.45
LIG3-203ENST00000585370 MB21D2Q8IYB1 491 aaPredicted RBP12.23□□□□□ -0.45
LIG3-203ENST00000585370 TMEM87BQ96K49 555 aa12.23□□□□□ -0.45
LIG3-203ENST00000585370 RIOK1Q9BRS2 568 aaKnown RBP12.23□□□□□ -0.45
LIG3-203ENST00000585370 NOL10Q9BSC4 688 aaKnown RBP12.23□□□□□ -0.45
LIG3-203ENST00000585370 CRNKL1Q9BZJ0 848 aaKnown RBP12.23□□□□□ -0.45
LIG3-203ENST00000585370 ATP8A2Q9NTI2 1148 aa12.23□□□□□ -0.45
LIG3-203ENST00000585370 ANAPC4Q9UJX5 808 aa12.23□□□□□ -0.45
LIG3-203ENST00000585370 ATP6V1DQ9Y5K8 247 aa12.23□□□□□ -0.45
LIG3-203ENST00000585370 CA12O43570 354 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 DHX16O60231 1041 aaKnown RBP12.22□□□□□ -0.45
LIG3-203ENST00000585370 BAG3O95817 575 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 TDO2P48775 406 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 PPP4CP60510 307 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 HAND2P61296 217 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 HMGN5P82970 282 aaKnown RBP12.22□□□□□ -0.45
LIG3-203ENST00000585370 NOGQ13253 232 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 AKNAD1Q5T1N1 836 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 RGMBQ6NW40 437 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 MFSD6Q6ZSS7 791 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 LCORLQ8N3X6 602 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 AGBL3Q8NEM8 1001 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 BRF1Q92994 677 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 GTF3C6Q969F1 213 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 GMLQ99445 158 aa12.22□□□□□ -0.45
LIG3-203ENST00000585370 GBA2Q9HCG7 927 aaPredicted RBP12.22□□□□□ -0.45
LIG3-203ENST00000585370 CASP8AP2Q9UKL3 1982 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 COL1A1P02452 1464 aaPredicted RBP12.21□□□□□ -0.45
LIG3-203ENST00000585370 FAM205AQ6ZU69 1335 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 USP17L3A6NCW0 530 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 USP17L4A6NCW7 530 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 PRC1O43663 620 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 BAG4O95429 457 aaKnown RBP12.21□□□□□ -0.45
LIG3-203ENST00000585370 PLCG2P16885 1265 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 GJB2P29033 226 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 USP17L1Q7RTZ2 530 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 PODNQ7Z5L7 613 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 SULF1Q8IWU6 871 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 TMTC2Q8N394 836 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 C2orf69Q8N8R5 385 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 MIGA1Q8NAN2 632 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 RGS22Q8NE09 1264 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 STAG1Q8WVM7 1258 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 FAM163AQ96GL9 167 aaPredicted RBP12.21□□□□□ -0.45
LIG3-203ENST00000585370 LARP6Q9BRS8 491 aaKnown RBP12.21□□□□□ -0.45
LIG3-203ENST00000585370 GGA3Q9NZ52 723 aa12.21□□□□□ -0.45
LIG3-203ENST00000585370 STX6O43752 255 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 LARGE1O95461 756 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 SLC3A2P08195 630 aaKnown RBP12.2□□□□□ -0.46
LIG3-203ENST00000585370 USP17L8P0C7I0 530 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 SYT1P21579 422 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 SART3Q15020 963 aaKnown RBP12.2□□□□□ -0.46
LIG3-203ENST00000585370 SBK1Q52WX2 424 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 ANGEL2Q5VTE6 544 aaKnown RBP12.2□□□□□ -0.46
LIG3-203ENST00000585370 NECAB1Q8N987 351 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 TCEANC2Q96MN5 208 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 MXD3Q9BW11 206 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 EPB41L4AQ9HCS5 686 aaPredicted RBP12.2□□□□□ -0.46
LIG3-203ENST00000585370 MYOZ2Q9NPC6 264 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 ZDHHC9Q9Y397 364 aa12.2□□□□□ -0.46
LIG3-203ENST00000585370 MYO5AQ9Y4I1 1855 aaKnown RBP12.2□□□□□ -0.46
LIG3-203ENST00000585370 CCDC85CA6NKD9 419 aa12.19□□□□□ -0.46
LIG3-203ENST00000585370 PRKAB2O43741 272 aa12.19□□□□□ -0.46
LIG3-203ENST00000585370 ZSCAN22P10073 491 aaPredicted RBP12.19□□□□□ -0.46
LIG3-203ENST00000585370 PRDX5P30044 214 aa12.19□□□□□ -0.46
LIG3-203ENST00000585370 PDIA3P30101 505 aaKnown RBP12.19□□□□□ -0.46
LIG3-203ENST00000585370 LIFRP42702 1097 aa12.19□□□□□ -0.46
LIG3-203ENST00000585370 ZNF157P51786 506 aaPredicted RBP12.19□□□□□ -0.46
LIG3-203ENST00000585370 KIF23Q02241 960 aaPredicted RBP12.19□□□□□ -0.46
LIG3-203ENST00000585370 PPARAQ07869 468 aa12.19□□□□□ -0.46
LIG3-203ENST00000585370 LARP1BQ659C4 914 aaKnown RBP12.19□□□□□ -0.46
LIG3-203ENST00000585370 ADGRA1Q86SQ6 560 aa12.19□□□□□ -0.46
LIG3-203ENST00000585370 CCDC102AQ96A19 550 aa12.19□□□□□ -0.46
LIG3-203ENST00000585370 CDCA5Q96FF9 252 aa12.19□□□□□ -0.46
LIG3-203ENST00000585370 ANGEL1Q9UNK9 670 aaKnown RBP12.19□□□□□ -0.46
LIG3-203ENST00000585370 SCAF8Q9UPN6 1271 aaKnown RBP12.19□□□□□ -0.46
LIG3-203ENST00000585370 FGRP09769 529 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 FKBP1AP62942 108 aaKnown RBP12.18□□□□□ -0.46
LIG3-203ENST00000585370 APOBRQ0VD83 1088 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 DACT2Q5SW24 774 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 SGMS1Q86VZ5 419 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 TBC1D10CQ8IV04 446 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 AMOTL1Q8IY63 956 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 SMARCC2Q8TAQ2 1214 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 ZNF384Q8TF68 577 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 MCOLN1Q9GZU1 580 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 NBPF3Q9H094 633 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 ARPP21Q9UBL0 812 aaPredicted RBP12.18□□□□□ -0.46
LIG3-203ENST00000585370 PSME4Q14997 1843 aa12.18□□□□□ -0.46
LIG3-203ENST00000585370 ERICH2A1L162 156 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 B4E1Z4 1266 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 TRAK2O60296 914 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 RCAN1P53805 252 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 ANTXR2P58335 489 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 DYNLL1P63167 89 aaKnown RBP12.17□□□□□ -0.46
LIG3-203ENST00000585370 ST3GAL1Q11201 340 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms