RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 NTSR2O95665 410 aa12.09□□□□□ -0.47
TOP3A-209ENST00000580095 U2AF2P26368 475 aaKnown RBP eCLIP12.09□□□□□ -0.473e-6■■□□□ 13
TOP3A-209ENST00000580095 PDE4BQ07343 736 aa12.09□□□□□ -0.47
TOP3A-209ENST00000580095 MAP7D2Q96T17 732 aa12.09□□□□□ -0.47
TOP3A-209ENST00000580095 HSD3B7Q9H2F3 369 aa12.09□□□□□ -0.47
TOP3A-209ENST00000580095 KCNH3Q9ULD8 1083 aa12.09□□□□□ -0.47
TOP3A-209ENST00000580095 PCDHA5Q9Y5H7 936 aa12.09□□□□□ -0.47
TOP3A-209ENST00000580095 NCBP1Q09161 790 aaKnown RBP12.08□□□□□ -0.48
TOP3A-209ENST00000580095 NOSTRINQ8IVI9 506 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 CNNM3Q8NE01 707 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 CCDC112Q8NEF3 446 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 NACAP1Q9BZK3 213 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 DISP2A7MBM2 1401 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.08□□□□□ -0.48
TOP3A-209ENST00000580095 COL4A1P02462 1669 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 LRP6O75581 1613 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 TMEM232C9JQI7 657 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 ATRNO75882 1429 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 ZSCAN20P17040 1043 aaPredicted RBP12.08□□□□□ -0.48
TOP3A-209ENST00000580095 BMP6P22004 513 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 FANCCQ00597 558 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 PTPN14Q15678 1187 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 NOM1Q5C9Z4 860 aaKnown RBP12.08□□□□□ -0.48
TOP3A-209ENST00000580095 TRMT44Q8IYL2 757 aaKnown RBP12.08□□□□□ -0.48
TOP3A-209ENST00000580095 PDCL2Q8N4E4 241 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 ABCA3Q99758 1704 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 UBAC1Q9BSL1 405 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 CABP5Q9NP86 173 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 VPS54Q9P1Q0 977 aa12.08□□□□□ -0.48
TOP3A-209ENST00000580095 ITGB4P16144 1822 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 FMNL1O95466 1100 aaPredicted RBP12.07□□□□□ -0.48
TOP3A-209ENST00000580095 PRR29P0C7W0 189 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 CASP1P29466 404 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 LIFRP42702 1097 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 PPARAQ07869 468 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 SHISA4Q96DD7 197 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 FANCLQ9NW38 375 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 HPSEQ9Y251 543 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 ERICH2A1L162 156 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 POLR2DO15514 142 aaKnown RBP12.07□□□□□ -0.48
TOP3A-209ENST00000580095 NMT2O60551 498 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 SERPINC1P01008 464 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 ALX1Q15699 326 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 EARS2Q5JPH6 523 aaKnown RBP12.07□□□□□ -0.48
TOP3A-209ENST00000580095 RESP18Q5W5W9 173 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 ZNF654Q8IZM8 581 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 CCAR2Q8N163 923 aaKnown RBP12.07□□□□□ -0.48
TOP3A-209ENST00000580095 TFCP2L1Q9NZI6 479 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 MMP1P03956 469 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 IFNAR1P17181 557 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 RBM6P78332 1123 aaKnown RBP12.07□□□□□ -0.48
TOP3A-209ENST00000580095 CFAP100Q494V2 611 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 TRIM22Q8IYM9 498 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 FANCBQ8NB91 859 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 KRT23Q9C075 422 aa12.07□□□□□ -0.48
TOP3A-209ENST00000580095 TNKSO95271 1327 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 SMTNL1A8MU46 457 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 WNT7AO00755 349 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 SART3Q15020 963 aaKnown RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 FAM182BQ5T319 152 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 E4F1Q66K89 784 aaPredicted RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 CRACR2BQ8N4Y2 399 aaPredicted RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 JMYQ8N9B5 988 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 CELF1Q92879 486 aaKnown RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 CCDC94Q9BW85 323 aaPredicted RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 MYH15Q9Y2K3 1946 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 BAZ2BQ9UIF8 2168 aaKnown RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 MAGEB6P1A0A0J9YX57 407 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 CTIFO43310 598 aaKnown RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 COBLO75128 1261 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 PLEKHA8P1O95397 391 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 SFPQP23246 707 aaKnown RBP eCLIP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 UBASH3AP57075 661 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 SAFBQ15424 915 aaKnown RBP eCLIP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 KRBA2Q6ZNG9 492 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 KRI1Q8N9T8 703 aaKnown RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 ZNF384Q8TF68 577 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 STAG1Q8WVM7 1258 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 CNNM2Q9H8M5 875 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 SERTAD1Q9UHV2 236 aa12.06□□□□□ -0.48
TOP3A-209ENST00000580095 ZNF215Q9UL58 517 aaPredicted RBP12.06□□□□□ -0.48
TOP3A-209ENST00000580095 PPP6R2O75170 966 aa12.05□□□□□ -0.48
TOP3A-209ENST00000580095 TMX1Q9H3N1 280 aa12.05□□□□□ -0.48
TOP3A-209ENST00000580095 COL16A1Q07092 1604 aaPredicted RBP12.05□□□□□ -0.48
TOP3A-209ENST00000580095 NUP98P52948 1817 aa12.05□□□□□ -0.48
TOP3A-209ENST00000580095 TULP1O00294 542 aaPredicted RBP12.05□□□□□ -0.48
TOP3A-209ENST00000580095 FAM47AQ5JRC9 791 aa12.05□□□□□ -0.48
TOP3A-209ENST00000580095 STAMQ92783 540 aa12.05□□□□□ -0.48
TOP3A-209ENST00000580095 V9GY48 417 aaPredicted RBP12.05□□□□□ -0.48
TOP3A-209ENST00000580095 IGSF3O75054 1194 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 VEGFAP15692 232 aaPredicted RBP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 FMR1Q06787 632 aaKnown RBP eCLIP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 NYAP1Q6ZVC0 841 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 ANKRD18AQ8IVF6 992 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 FAM177A1Q8N128 213 aaPredicted RBP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 ENAHQ8N8S7 591 aaPredicted RBP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 LRRN4CLQ8ND94 238 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 RNF216Q9NWF9 866 aaPredicted RBP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 TUBE1Q9UJT0 475 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 MTMR7Q9Y216 660 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms