RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 UBE3DQ7Z6J8 389 aa8.98□□□□□ -0.97
SMCHD1-202ENST00000577300 HRASLS5Q96KN8 279 aa8.98□□□□□ -0.97
SMCHD1-202ENST00000577300 GTF2IRD1Q9UHL9 959 aa8.98□□□□□ -0.97
SMCHD1-202ENST00000577300 SNX11Q9Y5W9 270 aa8.98□□□□□ -0.97
SMCHD1-202ENST00000577300 YBX3P16989 372 aaKnown RBP eCLIP8.97□□□□□ -0.97
SMCHD1-202ENST00000577300 GNA15P30679 374 aa8.97□□□□□ -0.97
SMCHD1-202ENST00000577300 AOC3Q16853 763 aa8.97□□□□□ -0.97
SMCHD1-202ENST00000577300 ELMO3Q96BJ8 720 aa8.97□□□□□ -0.97
SMCHD1-202ENST00000577300 PRPF40AO75400 957 aaKnown RBP8.96□□□□□ -0.98
SMCHD1-202ENST00000577300 FGD1P98174 961 aa8.96□□□□□ -0.98
SMCHD1-202ENST00000577300 CDC37L1Q7L3B6 337 aa8.96□□□□□ -0.98
SMCHD1-202ENST00000577300 TTF2Q9UNY4 1162 aaKnown RBP8.96□□□□□ -0.98
SMCHD1-202ENST00000577300 PAPLNO95428 1278 aa8.95□□□□□ -0.98
SMCHD1-202ENST00000577300 EIF4BP23588 611 aaKnown RBP8.95□□□□□ -0.98
SMCHD1-202ENST00000577300 INPP5AQ14642 412 aa8.95□□□□□ -0.98
SMCHD1-202ENST00000577300 CYFIP1Q7L576 1253 aa8.95□□□□□ -0.98
SMCHD1-202ENST00000577300 ZNF507Q8TCN5 953 aa8.95□□□□□ -0.98
SMCHD1-202ENST00000577300 GAL3ST3Q96A11 431 aa8.95□□□□□ -0.98
SMCHD1-202ENST00000577300 BIN1O00499 593 aa8.94□□□□□ -0.98
SMCHD1-202ENST00000577300 LRIG2O94898 1065 aa8.94□□□□□ -0.98
SMCHD1-202ENST00000577300 ITIH2P19823 946 aa8.94□□□□□ -0.98
SMCHD1-202ENST00000577300 PTPN11Q06124 597 aaPredicted RBP8.94□□□□□ -0.98
SMCHD1-202ENST00000577300 LRFN4Q6PJG9 635 aa8.94□□□□□ -0.98
SMCHD1-202ENST00000577300 AK5Q9Y6K8 562 aa8.94□□□□□ -0.98
SMCHD1-202ENST00000577300 EOMESO95936 686 aa8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 CD96P40200 585 aa8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 ANGEL2Q5VTE6 544 aaKnown RBP8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 TTBK2Q6IQ55 1244 aa8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 ARMCX6Q7L4S7 300 aa8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 HDXQ7Z353 690 aa8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 ATG4DQ86TL0 474 aaPredicted RBP8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 MBNL3Q9NUK0 354 aaKnown RBP8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 SNCAIPQ9Y6H5 919 aa8.93□□□□□ -0.98
SMCHD1-202ENST00000577300 RNASE1P07998 156 aaKnown RBP8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 CAP2P40123 477 aa8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 RPS26P62854 115 aaKnown RBP8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 OGFOD2Q6N063 350 aa8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 SPACA3Q8IXA5 215 aa8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 PI4K2BQ8TCG2 481 aa8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 PLPPR2Q96GM1 343 aa8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 WNT10AQ9GZT5 417 aa8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 RC3H2Q9HBD1 1191 aaKnown RBP8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 ADAMTS6Q9UKP5 1117 aa8.92□□□□□ -0.98
SMCHD1-202ENST00000577300 PRAMEF27A3QJZ7 478 aa8.91□□□□□ -0.98
SMCHD1-202ENST00000577300 BTBD11A6QL63 1104 aa8.91□□□□□ -0.98
SMCHD1-202ENST00000577300 POU5F2Q8N7G0 328 aa8.91□□□□□ -0.98
SMCHD1-202ENST00000577300 ASB11Q8WXH4 323 aa8.91□□□□□ -0.98
SMCHD1-202ENST00000577300 MAPK8IP1Q9UQF2 711 aa8.91□□□□□ -0.98
SMCHD1-202ENST00000577300 SLBPQ14493 270 aaKnown RBP eCLIP8.9□□□□□ -0.98
SMCHD1-202ENST00000577300 NKPD1Q17RQ9 610 aa8.9□□□□□ -0.98
SMCHD1-202ENST00000577300 SLC23A3Q6PIS1 610 aa8.9□□□□□ -0.98
SMCHD1-202ENST00000577300 SND1Q7KZF4 910 aaKnown RBP eCLIP8.9□□□□□ -0.98
SMCHD1-202ENST00000577300 PRDM5Q9NQX1 630 aaPredicted RBP8.9□□□□□ -0.98
SMCHD1-202ENST00000577300 ANKRD33BA6NCL7 494 aa8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 GNAT3A8MTJ3 354 aa8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 CLCN7P51798 805 aa8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 CCDC85BQ15834 202 aaPredicted RBP8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 EAPPQ56P03 285 aaPredicted RBP8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 WIPI1Q5MNZ9 446 aaPredicted RBP8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 DUSP9Q99956 384 aaKnown RBP8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 FOXQ1Q9C009 403 aa8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 FBRSQ9HAH7 460 aa8.89□□□□□ -0.99
SMCHD1-202ENST00000577300 SLITRK5O94991 958 aa8.88□□□□□ -0.99
SMCHD1-202ENST00000577300 C22orf34Q6ZV56 151 aa8.88□□□□□ -0.99
SMCHD1-202ENST00000577300 MFSD2AQ8NA29 543 aa8.88□□□□□ -0.99
SMCHD1-202ENST00000577300 LRRN4CLQ8ND94 238 aa8.88□□□□□ -0.99
SMCHD1-202ENST00000577300 KRTAP9-9Q9BYP9 154 aa8.88□□□□□ -0.99
SMCHD1-202ENST00000577300 KRTAP9-4Q9BYQ2 154 aa8.88□□□□□ -0.99
SMCHD1-202ENST00000577300 TACC3Q9Y6A5 838 aa8.88□□□□□ -0.99
SMCHD1-202ENST00000577300 CARMIL2Q6F5E8 1435 aa8.88□□□□□ -0.99
SMCHD1-202ENST00000577300 AGMOQ6ZNB7 445 aa8.87□□□□□ -0.99
SMCHD1-202ENST00000577300 HID1Q8IV36 788 aa8.87□□□□□ -0.99
SMCHD1-202ENST00000577300 RNF19AQ9NV58 838 aa8.87□□□□□ -0.99
SMCHD1-202ENST00000577300 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.87□□□□□ -0.99
SMCHD1-202ENST00000577300 PITPNM2Q9BZ72 1349 aa8.86□□□□□ -0.99
SMCHD1-202ENST00000577300 ZNF865P0CJ78 1059 aaPredicted RBP8.86□□□□□ -0.99
SMCHD1-202ENST00000577300 LMNB1P20700 586 aa8.86□□□□□ -0.99
SMCHD1-202ENST00000577300 CDK8P49336 464 aa8.86□□□□□ -0.99
SMCHD1-202ENST00000577300 ETF1P62495 437 aaKnown RBP8.86□□□□□ -0.99
SMCHD1-202ENST00000577300 NKG7Q16617 165 aa8.86□□□□□ -0.99
SMCHD1-202ENST00000577300 PCDHB5Q9Y5E4 795 aa8.86□□□□□ -0.99
SMCHD1-202ENST00000577300 GFRA2O00451 464 aa8.85□□□□□ -0.99
SMCHD1-202ENST00000577300 LIG3P49916 1009 aa8.85□□□□□ -0.99
SMCHD1-202ENST00000577300 IKZF1Q13422 519 aa8.85□□□□□ -0.99
SMCHD1-202ENST00000577300 FLAD1Q8NFF5 587 aa8.85□□□□□ -0.99
SMCHD1-202ENST00000577300 MIPEPQ99797 713 aa8.85□□□□□ -0.99
SMCHD1-202ENST00000577300 CST3P01034 146 aaPredicted RBP8.84□□□□□ -0.99
SMCHD1-202ENST00000577300 GRK4P32298 578 aa8.84□□□□□ -0.99
SMCHD1-202ENST00000577300 ZP2Q05996 745 aa8.84□□□□□ -0.99
SMCHD1-202ENST00000577300 SEPT6Q14141 434 aa8.84□□□□□ -0.99
SMCHD1-202ENST00000577300 SFRP5Q5T4F7 317 aa8.84□□□□□ -0.99
SMCHD1-202ENST00000577300 FAM168AQ92567 244 aa8.84□□□□□ -0.99
SMCHD1-202ENST00000577300 LMCD1Q9NZU5 365 aa8.84□□□□□ -0.99
SMCHD1-202ENST00000577300 TPX2Q9ULW0 747 aaKnown RBP8.84□□□□□ -0.99
SMCHD1-202ENST00000577300 RLBP1P12271 317 aa8.83□□□□□ -1
SMCHD1-202ENST00000577300 ZNF746Q6NUN9 644 aaPredicted RBP8.83□□□□□ -1
SMCHD1-202ENST00000577300 SEMA3GQ9NS98 782 aa8.83□□□□□ -1
SMCHD1-202ENST00000577300 PARP2Q9UGN5 583 aa8.83□□□□□ -1
SMCHD1-202ENST00000577300 CNTNAP4Q9C0A0 1308 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms