RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 C7orf69Q9H7B7 122 aa7.85□□□□□ -1.15
NUP88-208ENST00000574087 STOML1Q9UBI4 398 aa7.85□□□□□ -1.15
NUP88-208ENST00000574087 PRAMEF27A3QJZ7 478 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 DYRK3O43781 588 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 RNGTTO60942 597 aaKnown RBP7.84□□□□□ -1.15
NUP88-208ENST00000574087 BPNT1O95861 308 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 FURINP09958 794 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 ERCC5P28715 1186 aaPredicted RBP7.84□□□□□ -1.15
NUP88-208ENST00000574087 CRKP46108 304 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 MAP7Q14244 749 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 REC114Q7Z4M0 266 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 UBP1Q9NZI7 540 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 PCOLCE2Q9UKZ9 415 aa7.84□□□□□ -1.15
NUP88-208ENST00000574087 POLR3KQ9Y2Y1 108 aaPredicted RBP7.84□□□□□ -1.15
NUP88-208ENST00000574087 TLR3O15455 904 aaKnown RBP7.83□□□□□ -1.16
NUP88-208ENST00000574087 NFKBIBQ15653 356 aa7.83□□□□□ -1.16
NUP88-208ENST00000574087 PAOXQ6QHF9 649 aa7.83□□□□□ -1.16
NUP88-208ENST00000574087 NPM2Q86SE8 214 aaKnown RBP7.83□□□□□ -1.16
NUP88-208ENST00000574087 PICK1Q9NRD5 415 aa7.83□□□□□ -1.16
NUP88-208ENST00000574087 DAGLAQ9Y4D2 1042 aa7.83□□□□□ -1.16
NUP88-208ENST00000574087 PRR36Q9H6K5 1346 aa7.82□□□□□ -1.16
NUP88-208ENST00000574087 DYNC1LI2O43237 492 aaPredicted RBP7.82□□□□□ -1.16
NUP88-208ENST00000574087 GRK4P32298 578 aa7.82□□□□□ -1.16
NUP88-208ENST00000574087 CWF19L2Q2TBE0 894 aaKnown RBP7.82□□□□□ -1.16
NUP88-208ENST00000574087 UBE3DQ7Z6J8 389 aa7.82□□□□□ -1.16
NUP88-208ENST00000574087 SLITRK4Q8IW52 837 aa7.82□□□□□ -1.16
NUP88-208ENST00000574087 ZNF507Q8TCN5 953 aa7.82□□□□□ -1.16
NUP88-208ENST00000574087 ACBD3Q9H3P7 528 aa7.82□□□□□ -1.16
NUP88-208ENST00000574087 C1GALT1Q9NS00 363 aa7.82□□□□□ -1.16
NUP88-208ENST00000574087 APOBRQ0VD83 1088 aa7.81□□□□□ -1.16
NUP88-208ENST00000574087 PAK2Q13177 524 aa7.81□□□□□ -1.16
NUP88-208ENST00000574087 RNF43Q68DV7 783 aa7.81□□□□□ -1.16
NUP88-208ENST00000574087 KCT2Q8NC54 265 aa7.81□□□□□ -1.16
NUP88-208ENST00000574087 PSMG3-AS1Q96PY0 264 aa7.81□□□□□ -1.16
NUP88-208ENST00000574087 FBRSQ9HAH7 460 aa7.81□□□□□ -1.16
NUP88-208ENST00000574087 PRKAG2Q9UGJ0 569 aa7.81□□□□□ -1.16
NUP88-208ENST00000574087 CORINQ9Y5Q5 1042 aa7.81□□□□□ -1.16
NUP88-208ENST00000574087 FSTP19883 344 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 GJA8P48165 433 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 ETF1P62495 437 aaKnown RBP7.8□□□□□ -1.16
NUP88-208ENST00000574087 PDE4BQ07343 736 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 NFIAQ12857 509 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 SLBPQ14493 270 aaKnown RBP eCLIP7.8□□□□□ -1.16
NUP88-208ENST00000574087 SEZ6Q53EL9 994 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.8□□□□□ -1.16
NUP88-208ENST00000574087 RASGRP4Q8TDF6 673 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 GATA6Q92908 595 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 NKD1Q969G9 470 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 CCSER2Q9H7U1 834 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 LGR6Q9HBX8 967 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 BRMS1Q9HCU9 246 aa7.8□□□□□ -1.16
NUP88-208ENST00000574087 SSU72Q9NP77 194 aaKnown RBP7.8□□□□□ -1.16
NUP88-208ENST00000574087 GRIN3BO60391 1043 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 ATE1O95260 518 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 IGLV1-40P01703 118 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 PGRP06401 933 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 ADMP35318 185 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 CAP2P40123 477 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 NKG7Q16617 165 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 TMEM201Q5SNT2 666 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 CDC37L1Q7L3B6 337 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 SLC51AQ86UW1 340 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 HID1Q8IV36 788 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 SEMA6BQ9H3T3 888 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 ADAM30Q9UKF2 790 aa7.79□□□□□ -1.16
NUP88-208ENST00000574087 GSC2O15499 205 aa7.78□□□□□ -1.16
NUP88-208ENST00000574087 ITGB7P26010 798 aa7.78□□□□□ -1.16
NUP88-208ENST00000574087 TNNI2P48788 182 aa7.78□□□□□ -1.16
NUP88-208ENST00000574087 SHISA5Q8N114 240 aa7.78□□□□□ -1.16
NUP88-208ENST00000574087 REXO1Q8N1G1 1221 aaKnown RBP7.78□□□□□ -1.16
NUP88-208ENST00000574087 ACSF2Q96CM8 615 aaPredicted RBP7.78□□□□□ -1.16
NUP88-208ENST00000574087 GPRASP2Q96D09 838 aa7.78□□□□□ -1.16
NUP88-208ENST00000574087 DBNDD2Q9BQY9 259 aa7.78□□□□□ -1.16
NUP88-208ENST00000574087 EHMT1Q9H9B1 1298 aa7.78□□□□□ -1.16
NUP88-208ENST00000574087 TJP2Q9UDY2 1190 aa7.78□□□□□ -1.16
NUP88-208ENST00000574087 HTR3BO95264 441 aa7.77□□□□□ -1.17
NUP88-208ENST00000574087 PLCG1P19174 1290 aa7.77□□□□□ -1.17
NUP88-208ENST00000574087 CDK5R2Q13319 367 aa7.77□□□□□ -1.17
NUP88-208ENST00000574087 PRSS36Q5K4E3 855 aa7.77□□□□□ -1.17
NUP88-208ENST00000574087 ZAR1Q86SH2 424 aa7.77□□□□□ -1.17
NUP88-208ENST00000574087 MCATQ8IVS2 390 aaKnown RBP7.77□□□□□ -1.17
NUP88-208ENST00000574087 MRPL41Q8IXM3 137 aaKnown RBP7.77□□□□□ -1.17
NUP88-208ENST00000574087 SPATA32Q96LK8 384 aa7.77□□□□□ -1.17
NUP88-208ENST00000574087 PCDHB14Q9Y5E9 798 aa7.77□□□□□ -1.17
NUP88-208ENST00000574087 K7ELQ4 463 aaPredicted RBP7.76□□□□□ -1.17
NUP88-208ENST00000574087 LRIG2O94898 1065 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 F13BP05160 661 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 ZNF165P49910 485 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 CLCQ05315 142 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 SLC6A19Q695T7 634 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 MFSD14AQ96MC6 490 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 TBC1D32Q96NH3 1257 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 REV1Q9UBZ9 1251 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 INPP5FQ9Y2H2 1132 aa7.76□□□□□ -1.17
NUP88-208ENST00000574087 MCM4P33991 863 aa7.75□□□□□ -1.17
NUP88-208ENST00000574087 COL9A2Q14055 689 aaPredicted RBP7.75□□□□□ -1.17
NUP88-208ENST00000574087 OGFOD3Q6PK18 319 aa7.75□□□□□ -1.17
NUP88-208ENST00000574087 ARMCX6Q7L4S7 300 aa7.75□□□□□ -1.17
NUP88-208ENST00000574087 SHKBP1Q8TBC3 707 aa7.75□□□□□ -1.17
NUP88-208ENST00000574087 TMEM87BQ96K49 555 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms