RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 ATG4CQ96DT6 458 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 DHRS4Q9BTZ2 278 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 NCOA5Q9HCD5 579 aaKnown RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 DNAJB12Q9NXW2 375 aaKnown RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 GMIPQ9P107 970 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 PCDHA4Q9UN74 947 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 SOX13Q9UN79 622 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 CORINQ9Y5Q5 1042 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 SNCAIPQ9Y6H5 919 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 DNAJC25-GNG10A0A024R161 153 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 SENP3-EIF4A1A0A087X0R7 540 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 FAM86C2PA6NEL3 165 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 GSG1L2A8MUP6 293 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PLIN1O60240 522 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 RASGRP1O95267 797 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 KRT18P05783 430 aaKnown RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 THBS1P07996 1170 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 ACRP10323 421 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 ARAFP10398 606 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PLCG1P19174 1290 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 GNALP38405 381 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 CABP4P57796 275 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PRR20EP86478 221 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PRR20CP86479 221 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PRR20DP86480 221 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PRR20BP86481 221 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PRR20AP86496 221 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PDE4BQ07343 736 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 HDAC1Q13547 482 aaPredicted RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 UBE4AQ14139 1066 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 UBAP2LQ14157 1087 aaKnown RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 IKBKEQ14164 716 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 SV2CQ496J9 727 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 FAM209AQ5JX71 171 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 WIPI1Q5MNZ9 446 aaPredicted RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 IFFO2Q5TF58 517 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 CDCP2Q5VXM1 449 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 OVOS1Q6IE37 1185 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 HDXQ7Z353 690 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PDZD3Q86UT5 571 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 LRRTM3Q86VH5 581 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 SCUBE1Q8IWY4 988 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 AHI1Q8N157 1196 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 AFAP1L2Q8N4X5 818 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 RIN3Q8TB24 985 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 KLHL6Q8WZ60 621 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 KISS1RQ969F8 398 aaPredicted RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 RNF166Q96A37 237 aaPredicted RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 ACSBG1Q96GR2 724 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 ABHD17AQ96GS6 310 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 CLUHP3Q96NS8 147 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 SLC9A7Q96T83 725 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 APBA2Q99767 749 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 TARS2Q9BW92 718 aaKnown RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 UBE2OQ9C0C9 1292 aaKnown RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 ZC3H12CQ9C0D7 883 aaKnown RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 LACRTQ9GZZ8 138 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 ADAM19Q9H013 955 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 CNNM2Q9H8M5 875 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 PRDM16Q9HAZ2 1276 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 SH2B1Q9NRF2 756 aaPredicted RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 NDFIP2Q9NV92 336 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 INTS7Q9NVH2 962 aaKnown RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 REV1Q9UBZ9 1251 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 DACH1Q9UI36 760 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 HCN2Q9UL51 889 aa2.77□□□□□ -1.97
CHD3-217ENST00000574022 MRPS23Q9Y3D9 190 aaKnown RBP2.77□□□□□ -1.97
CHD3-217ENST00000574022 TRBV23-1A0A0A0MS06 115 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 TRAV20A0A0B4J274 112 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 A0A1W2PQU0 124 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 SHTN1A0MZ66 631 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 CHURC1-FNTBB4DL54 471 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 SOX1O00570 391 aaPredicted RBP2.76□□□□□ -1.97
CHD3-217ENST00000574022 TNFRSF10CO14798 259 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 CREB3O43889 395 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 MAN1A2O60476 641 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 EIF4EBP3O60516 100 aaPredicted RBP2.76□□□□□ -1.97
CHD3-217ENST00000574022 KATNA1O75449 491 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 EYA4O95677 639 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 NAT2P11245 290 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 BMP1P13497 986 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 CPB1P15086 417 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 ATF3P18847 181 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 CDC27P30260 824 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 RAB27AP51159 221 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 GSTM4Q03013 218 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 MCL1Q07820 350 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 ITKQ08881 620 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 STRN3Q13033 797 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 HLTFQ14527 1009 aaKnown RBP eCLIP2.76□□□□□ -1.97
CHD3-217ENST00000574022 HSP90AA2PQ14568 343 aaPredicted RBP2.76□□□□□ -1.97
CHD3-217ENST00000574022 INPP5AQ14642 412 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 LRRC41Q15345 812 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 DBN1Q16643 649 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 BBS9Q3SYG4 887 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 TMEM201Q5SNT2 666 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 FAM182BQ5T319 152 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 PPP4R4Q6NUP7 873 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 ELMSAN1Q6PJG2 1045 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 LRFN4Q6PJG9 635 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms