RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 MYOM3Q5VTT5 1437 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 AATKQ6ZMQ8 1374 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 H3BRJ5 948 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 NOM1Q5C9Z4 860 aaKnown RBP7.89□□□□□ -1.15
VPS35-204ENST00000563884 KIAA1211Q6ZU35 1233 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 C1orf127Q8N9H9 656 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 UBASH3BQ8TF42 649 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 ORAI2Q96SN7 254 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 ADAM19Q9H013 955 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 SALL4Q9UJQ4 1053 aa7.89□□□□□ -1.15
VPS35-204ENST00000563884 RRBP1Q9P2E9 1410 aaKnown RBP7.88□□□□□ -1.15
VPS35-204ENST00000563884 KRTAP9-6A0A140TA67 174 aa7.88□□□□□ -1.15
VPS35-204ENST00000563884 SART1O43290 800 aaKnown RBP7.88□□□□□ -1.15
VPS35-204ENST00000563884 ACPPP15309 386 aa7.88□□□□□ -1.15
VPS35-204ENST00000563884 NPR3P17342 541 aa7.88□□□□□ -1.15
VPS35-204ENST00000563884 UVSSAQ2YD98 709 aa7.88□□□□□ -1.15
VPS35-204ENST00000563884 FOXD4L4Q8WXT5 416 aaPredicted RBP7.88□□□□□ -1.15
VPS35-204ENST00000563884 ARID3AQ99856 593 aa7.88□□□□□ -1.15
VPS35-204ENST00000563884 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.88□□□□□ -1.15
VPS35-204ENST00000563884 MAP3K5Q99683 1374 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 WDR90Q96KV7 1748 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 E9PCH4 1651 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 A6NHS1 94 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 TM4SF5O14894 197 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 ADAM11O75078 769 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 TRIM37O94972 964 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 TGFB1P01137 390 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 PDGFAP04085 211 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 XKR5Q6UX68 686 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 GTF3C2Q8WUA4 911 aaPredicted RBP7.87□□□□□ -1.15
VPS35-204ENST00000563884 SLC7A3Q8WY07 619 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 WNT8BQ93098 351 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 FAM46AQ96IP4 442 aaKnown RBP7.87□□□□□ -1.15
VPS35-204ENST00000563884 GGNBP2Q9H3C7 697 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 C7orf69Q9H7B7 122 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 SBF2Q86WG5 1849 aa7.87□□□□□ -1.15
VPS35-204ENST00000563884 PDE2AO00408 941 aaPredicted RBP7.86□□□□□ -1.15
VPS35-204ENST00000563884 COBLO75128 1261 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 TRPA1O75762 1119 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 MZF1P28698 734 aaPredicted RBP7.86□□□□□ -1.15
VPS35-204ENST00000563884 CD97P48960 835 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 NLRP12P59046 1061 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 NFIAQ12857 509 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 GPR162Q16538 588 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 TRIM42Q8IWZ5 723 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 PMEPA1Q969W9 287 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 MYRFLQ96LU7 910 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 SYT17Q9BSW7 474 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 DZANK1Q9NVP4 752 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 FMN2Q9NZ56 1722 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 HFM1A2PYH4 1435 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 TNS3Q68CZ2 1445 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 PRAG1Q86YV5 1406 aa7.86□□□□□ -1.15
VPS35-204ENST00000563884 HMX2A2RU54 273 aa7.85□□□□□ -1.15
VPS35-204ENST00000563884 MPSTP25325 297 aa7.85□□□□□ -1.15
VPS35-204ENST00000563884 EIF1AXP47813 144 aaKnown RBP7.85□□□□□ -1.15
VPS35-204ENST00000563884 ARL4DP49703 201 aa7.85□□□□□ -1.15
VPS35-204ENST00000563884 AAMPQ13685 434 aa7.85□□□□□ -1.15
VPS35-204ENST00000563884 KCNF1Q9H3M0 494 aa7.85□□□□□ -1.15
VPS35-204ENST00000563884 OSGEPQ9NPF4 335 aa7.85□□□□□ -1.15
VPS35-204ENST00000563884 TOPAZ1Q8N9V7 1692 aa7.85□□□□□ -1.15
VPS35-204ENST00000563884 KIF1BO60333 1816 aa7.85□□□□□ -1.15
VPS35-204ENST00000563884 ARHGEF10O15013 1369 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 SPATA31A3Q5VYP0 1347 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 IFT172Q9UG01 1749 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 NFKBIEO00221 500 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 RNF43Q68DV7 783 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 ANKRD34AQ69YU3 496 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 HHIPQ96QV1 700 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 RUSC1Q9BVN2 902 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 RNF208Q9H0X6 261 aa7.84□□□□□ -1.15
VPS35-204ENST00000563884 METP08581 1390 aa7.84□□□□□ -1.16
VPS35-204ENST00000563884 MED26O95402 600 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 BMP3P12645 472 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 GRIK1P39086 918 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 MCTP1Q6DN14 999 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 B4GALNT3Q6L9W6 998 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 ALKBH2Q6NS38 261 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 FDX2Q6P4F2 183 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 ZDHHC13Q8IUH4 622 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 CLEC10AQ8IUN9 316 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 FAM20CQ8IXL6 584 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 RETREG2Q8NC44 543 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 POLIQ9UNA4 740 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 MTMR7Q9Y216 660 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 RGPD8O14715 1765 aaPredicted RBP7.83□□□□□ -1.16
VPS35-204ENST00000563884 PARP4Q9UKK3 1724 aaKnown RBP7.83□□□□□ -1.16
VPS35-204ENST00000563884 ANKRD30AQ9BXX3 1397 aa7.83□□□□□ -1.16
VPS35-204ENST00000563884 AKAP12Q02952 1782 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 PREPP48147 710 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 PDE4CQ08493 712 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 C19orf57Q0VDD7 668 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 MTMR3Q13615 1198 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 BEND4Q6ZU67 534 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 OSMRQ99650 979 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 DBNDD2Q9BQY9 259 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 CHRDQ9H2X0 955 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 RRP7BPQ9NSQ0 103 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 ATP10DQ9P241 1426 aa7.82□□□□□ -1.16
VPS35-204ENST00000563884 SOX13Q9UN79 622 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms