RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZSWIM5Q9P217 1185 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 HOOK1Q9UJC3 728 aaKnown RBP8.73□□□□□ -1.01
VPS39-204ENST00000561818 LTBP1Q14766 1721 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 TSPY2A6NKD2 308 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 FIBPO43427 364 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 FMNL1O95466 1100 aaPredicted RBP8.72□□□□□ -1.01
VPS39-204ENST00000561818 HLA-DOAP06340 250 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 CALML3P27482 149 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 SMARCA1P28370 1054 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 PRDX5P30044 214 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 ANTXR2P58335 489 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 ST3GAL1Q11201 340 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 RESTQ13127 1097 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 RILPL1Q5EBL4 403 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 STRIP1Q5VSL9 837 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 HHIPL2Q6UWX4 724 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 CCDC73Q6ZRK6 1079 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 USP48Q86UV5 1035 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 MICU3Q86XE3 530 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 RTKN2Q8IZC4 609 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 ZNF444Q8N0Y2 327 aaPredicted RBP8.72□□□□□ -1.01
VPS39-204ENST00000561818 CCDC12Q8WUD4 166 aaPredicted RBP8.72□□□□□ -1.01
VPS39-204ENST00000561818 ANKS1AQ92625 1134 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 TCEANC2Q96MN5 208 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 DHX36Q9H2U1 1008 aaKnown RBP8.72□□□□□ -1.01
VPS39-204ENST00000561818 FOXP1Q9H334 677 aaPredicted RBP8.72□□□□□ -1.01
VPS39-204ENST00000561818 MKNK2Q9HBH9 465 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 MCM9Q9NXL9 1143 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 RTEL1Q9NZ71 1219 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 SYNPO2Q9UMS6 1093 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.72□□□□□ -1.01
VPS39-204ENST00000561818 TNKSO95271 1327 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 NEDD4P46934 1319 aa8.72□□□□□ -1.01
VPS39-204ENST00000561818 COL2A1P02458 1487 aaPredicted RBP8.71□□□□□ -1.01
VPS39-204ENST00000561818 A0A1W2PQ27 194 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 A0A1W2PQ64 194 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 A0A1W2PQD8 194 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 MINDY4BA8MYZ0 360 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 CCDC192P0DO97 292 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 NASPP49321 788 aaPredicted RBP8.71□□□□□ -1.02
VPS39-204ENST00000561818 CCT2P78371 535 aaKnown RBP8.71□□□□□ -1.02
VPS39-204ENST00000561818 DNM1Q05193 864 aaKnown RBP8.71□□□□□ -1.02
VPS39-204ENST00000561818 CCDC173Q0VFZ6 552 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 SF3A1Q15459 793 aaKnown RBP8.71□□□□□ -1.02
VPS39-204ENST00000561818 ZRSR1Q15695 479 aaKnown RBP8.71□□□□□ -1.02
VPS39-204ENST00000561818 ZNF827Q17R98 1081 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 C12orf60Q5U649 245 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 CTR9Q6PD62 1173 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 AMIGO3Q86WK7 504 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 ZNF654Q8IZM8 581 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 FANCBQ8NB91 859 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 CCDC148Q8NFR7 591 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 TEKT1Q969V4 418 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 CAMKK2Q96RR4 588 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 ALG1Q9BT22 464 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 NBPF3Q9H094 633 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 KAT14Q9H8E8 782 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 SH3GLB2Q9NR46 395 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 AATFQ9NY61 560 aaKnown RBP eCLIP8.71□□□□□ -1.02
VPS39-204ENST00000561818 HPS5Q9UPZ3 1129 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 TAF6LQ9Y6J9 622 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 PLIN4Q96Q06 1357 aa8.71□□□□□ -1.02
VPS39-204ENST00000561818 SPDYE2BA6NHP3 402 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 USP17L12C9JPN9 530 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 USP17L21D6R901 530 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 RANBP6O60518 1105 aaKnown RBP8.7□□□□□ -1.02
VPS39-204ENST00000561818 JAK2O60674 1132 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 PPP6R2O75170 966 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 POLR3DP05423 398 aaPredicted RBP8.7□□□□□ -1.02
VPS39-204ENST00000561818 SPDYE6P0CI01 402 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 U2AF2P26368 475 aaKnown RBP eCLIP8.7□□□□□ -1.023e-6■□□□□ 8.2
VPS39-204ENST00000561818 BTDP43251 543 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 TRAPPC10P48553 1259 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 TRAF1Q13077 416 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 DHX8Q14562 1220 aaKnown RBP8.7□□□□□ -1.02
VPS39-204ENST00000561818 MAP3K11Q16584 847 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 SPDYE2Q495Y8 402 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 HS1BP3Q53T59 392 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 RRP12Q5JTH9 1297 aaKnown RBP8.7□□□□□ -1.02
VPS39-204ENST00000561818 CYB5R4Q7L1T6 521 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 C2CD5Q86YS7 1000 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 TEX11Q8IYF3 940 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 BICD2Q8TD16 824 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 SDR42E1Q8WUS8 393 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 LEO1Q8WVC0 666 aaPredicted RBP8.7□□□□□ -1.02
VPS39-204ENST00000561818 TRIM44Q96DX7 344 aaPredicted RBP8.7□□□□□ -1.02
VPS39-204ENST00000561818 CCDC17Q96LX7 622 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 LRRC2Q9BYS8 371 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 NUP62CLQ9H1M0 184 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 EHD4Q9H223 541 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 TSPY26PQ9H489 355 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 SERPINA10Q9UK55 444 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 RCOR1Q9UKL0 485 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 BRPF3Q9ULD4 1205 aa8.7□□□□□ -1.02
VPS39-204ENST00000561818 NOL7Q9UMY1 257 aaKnown RBP8.7□□□□□ -1.02
VPS39-204ENST00000561818 IQSEC3Q9UPP2 1182 aaPredicted RBP8.7□□□□□ -1.02
VPS39-204ENST00000561818 SNAP23O00161 211 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 KINO60870 393 aaKnown RBP8.69□□□□□ -1.02
VPS39-204ENST00000561818 CTDNEP1O95476 244 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 CHGBP05060 677 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms