RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLN3-208ENST00000561505 GPR108Q9NPR9 543 aa20.29■□□□□ 0.84
CLN3-208ENST00000561505 BIN2Q9UBW5 565 aaPredicted RBP20.29■□□□□ 0.84
CLN3-208ENST00000561505 HERC5Q9UII4 1024 aaKnown RBP20.29■□□□□ 0.84
CLN3-208ENST00000561505 LOC285556D6RIA3 1793 aa20.29■□□□□ 0.84
CLN3-208ENST00000561505 TNPO2O14787 897 aaKnown RBP20.28■□□□□ 0.84
CLN3-208ENST00000561505 INHAP05111 366 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 TRIM27P14373 513 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 MCAMP43121 646 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 GCLCP48506 637 aaPredicted RBP20.28■□□□□ 0.84
CLN3-208ENST00000561505 PPP4CP60510 307 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 CHRDL2Q6WN34 429 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 TBC1D9Q6ZT07 1266 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 ZNF280CQ8ND82 737 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 SMCR8Q8TEV9 937 aaPredicted RBP20.28■□□□□ 0.84
CLN3-208ENST00000561505 DPF3Q92784 378 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 RBM27Q9P2N5 1060 aaKnown RBP20.28■□□□□ 0.84
CLN3-208ENST00000561505 PNMA3Q9UL41 463 aa20.28■□□□□ 0.84
CLN3-208ENST00000561505 PNMA6EA0A0J9YXQ4 647 aa20.27■□□□□ 0.84
CLN3-208ENST00000561505 CCER2I3L3R5 266 aa20.27■□□□□ 0.84
CLN3-208ENST00000561505 ZBTB7BO15156 539 aaPredicted RBP20.27■□□□□ 0.84
CLN3-208ENST00000561505 FARP2O94887 1054 aaPredicted RBP20.27■□□□□ 0.84
CLN3-208ENST00000561505 GNAI2P04899 355 aa20.27■□□□□ 0.84
CLN3-208ENST00000561505 ELNP15502 786 aa20.27■□□□□ 0.84
CLN3-208ENST00000561505 SPP2Q13103 211 aa20.27■□□□□ 0.84
CLN3-208ENST00000561505 NEUROD6Q96NK8 337 aa20.27■□□□□ 0.84
CLN3-208ENST00000561505 WDR18Q9BV38 432 aa20.27■□□□□ 0.84
CLN3-208ENST00000561505 GJD2Q9UKL4 321 aa20.27■□□□□ 0.84
CLN3-208ENST00000561505 DOCK3Q8IZD9 2030 aa20.26■□□□□ 0.83
CLN3-208ENST00000561505 FAM196BA6NMK8 535 aa20.26■□□□□ 0.83
CLN3-208ENST00000561505 IPO8O15397 1037 aaKnown RBP20.26■□□□□ 0.83
CLN3-208ENST00000561505 UQCRFS1P1P0C7P4 283 aa20.26■□□□□ 0.83
CLN3-208ENST00000561505 ATF7IPQ6VMQ6 1270 aa20.26■□□□□ 0.83
CLN3-208ENST00000561505 ANKRD13CQ8N6S4 541 aa20.26■□□□□ 0.83
CLN3-208ENST00000561505 COA7Q96BR5 231 aa20.26■□□□□ 0.83
CLN3-208ENST00000561505 ZNF512BQ96KM6 892 aaPredicted RBP20.26■□□□□ 0.83
CLN3-208ENST00000561505 MORF4L1Q9UBU8 362 aa20.26■□□□□ 0.83
CLN3-208ENST00000561505 NR2E3Q9Y5X4 410 aa20.26■□□□□ 0.83
CLN3-208ENST00000561505 A0A1W2PPC1 479 aa20.25■□□□□ 0.83
CLN3-208ENST00000561505 USP17L5A8MUK1 530 aa20.25■□□□□ 0.83
CLN3-208ENST00000561505 POLA2Q14181 598 aa20.25■□□□□ 0.83
CLN3-208ENST00000561505 DHX36Q9H2U1 1008 aaKnown RBP20.25■□□□□ 0.83
CLN3-208ENST00000561505 HOXA7P31268 230 aaPredicted RBP20.24■□□□□ 0.83
CLN3-208ENST00000561505 PABPC4Q13310 644 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLN3-208ENST00000561505 ASCC2Q9H1I8 757 aaPredicted RBP20.24■□□□□ 0.83
CLN3-208ENST00000561505 GINM1Q9NU53 330 aa20.24■□□□□ 0.83
CLN3-208ENST00000561505 PI4KBQ9UBF8 816 aa20.24■□□□□ 0.83
CLN3-208ENST00000561505 TNNQ9UQP3 1299 aa20.24■□□□□ 0.83
CLN3-208ENST00000561505 SZT2Q5T011 3432 aa20.24■□□□□ 0.83
CLN3-208ENST00000561505 SIPA1L1O43166 1804 aa20.24■□□□□ 0.83
CLN3-208ENST00000561505 HMGCS2P54868 508 aa20.23■□□□□ 0.83
CLN3-208ENST00000561505 G3BP1Q13283 466 aaKnown RBP eCLIP20.23■□□□□ 0.83
CLN3-208ENST00000561505 GORABQ5T7V8 394 aa20.23■□□□□ 0.83
CLN3-208ENST00000561505 ANKLE1Q8NAG6 615 aa20.23■□□□□ 0.83
CLN3-208ENST00000561505 SSH3Q8TE77 659 aa20.23■□□□□ 0.83
CLN3-208ENST00000561505 DEFB118Q96PH6 123 aa20.23■□□□□ 0.83
CLN3-208ENST00000561505 RAI14Q9P0K7 980 aa20.23■□□□□ 0.83
CLN3-208ENST00000561505 JAG1P78504 1218 aa20.22■□□□□ 0.83
CLN3-208ENST00000561505 FOXP4Q8IVH2 680 aaPredicted RBP20.22■□□□□ 0.83
CLN3-208ENST00000561505 TEX11Q8IYF3 940 aa20.22■□□□□ 0.83
CLN3-208ENST00000561505 SH3RF3Q8TEJ3 882 aaPredicted RBP20.22■□□□□ 0.83
CLN3-208ENST00000561505 DNAJC18Q9H819 358 aa20.22■□□□□ 0.83
CLN3-208ENST00000561505 ATAD5Q96QE3 1844 aa20.21■□□□□ 0.83
CLN3-208ENST00000561505 PLCG2P16885 1265 aa20.21■□□□□ 0.83
CLN3-208ENST00000561505 BACE1P56817 501 aa20.21■□□□□ 0.83
CLN3-208ENST00000561505 AS3MTQ9HBK9 375 aa20.21■□□□□ 0.83
CLN3-208ENST00000561505 LRP2BPQ9P2M1 347 aa20.21■□□□□ 0.83
CLN3-208ENST00000561505 BCAR3O75815 825 aa20.2■□□□□ 0.82
CLN3-208ENST00000561505 BAG3O95817 575 aa20.2■□□□□ 0.82
CLN3-208ENST00000561505 TFRCP02786 760 aaKnown RBP20.2■□□□□ 0.82
CLN3-208ENST00000561505 HMGCRP04035 888 aa20.2■□□□□ 0.82
CLN3-208ENST00000561505 CYP2E1P05181 493 aaPredicted RBP20.2■□□□□ 0.82
CLN3-208ENST00000561505 ASNSP08243 561 aa20.2■□□□□ 0.82
CLN3-208ENST00000561505 MNX1P50219 401 aaPredicted RBP20.2■□□□□ 0.82
CLN3-208ENST00000561505 TNNI3KQ59H18 835 aa20.2■□□□□ 0.82
CLN3-208ENST00000561505 MAP3K21Q5TCX8 1036 aa20.2■□□□□ 0.82
CLN3-208ENST00000561505 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.2■□□□□ 0.82
CLN3-208ENST00000561505 NOP58Q9Y2X3 529 aaKnown RBP20.2■□□□□ 0.82
CLN3-208ENST00000561505 FPGT-TNNI3KV9GXZ4 949 aa20.2■□□□□ 0.82
CLN3-208ENST00000561505 PLXNB2O15031 1838 aa20.19■□□□□ 0.82
CLN3-208ENST00000561505 C19orf81C9J6K1 198 aa20.19■□□□□ 0.82
CLN3-208ENST00000561505 ATP8B2P98198 1209 aa20.19■□□□□ 0.82
CLN3-208ENST00000561505 NAA16Q6N069 864 aaPredicted RBP20.19■□□□□ 0.82
CLN3-208ENST00000561505 ADGRA1Q86SQ6 560 aa20.19■□□□□ 0.82
CLN3-208ENST00000561505 PAWRQ96IZ0 340 aaKnown RBP20.19■□□□□ 0.82
CLN3-208ENST00000561505 RPTORQ8N122 1335 aa20.19■□□□□ 0.82
CLN3-208ENST00000561505 MAST2Q6P0Q8 1798 aa20.18■□□□□ 0.82
CLN3-208ENST00000561505 XRCC5P13010 732 aaKnown RBP20.18■□□□□ 0.82
CLN3-208ENST00000561505 USP6NLQ92738 828 aa20.18■□□□□ 0.82
CLN3-208ENST00000561505 DBNDD2Q9BQY9 259 aa20.18■□□□□ 0.82
CLN3-208ENST00000561505 AATFQ9NY61 560 aaKnown RBP eCLIP20.18■□□□□ 0.82
CLN3-208ENST00000561505 FLT1P17948 1338 aa20.18■□□□□ 0.82
CLN3-208ENST00000561505 FOCADQ5VW36 1801 aa20.18■□□□□ 0.82
CLN3-208ENST00000561505 EVI5O60447 810 aa20.17■□□□□ 0.82
CLN3-208ENST00000561505 CCDC158Q5M9N0 1113 aa20.17■□□□□ 0.82
CLN3-208ENST00000561505 NECAB2Q7Z6G3 386 aa20.17■□□□□ 0.82
CLN3-208ENST00000561505 TMEM57Q8N5G2 664 aa20.17■□□□□ 0.82
CLN3-208ENST00000561505 P2RX7Q99572 595 aaKnown RBP20.17■□□□□ 0.82
CLN3-208ENST00000561505 GDF15Q99988 308 aa20.17■□□□□ 0.82
CLN3-208ENST00000561505 OGDHLQ9ULD0 1010 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms