RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TTLL11Q8NHH1 800 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.97□□□□□ -0.33
CUX1-218ENST00000560541 FAM217BQ9NTX9 383 aaPredicted RBP12.97□□□□□ -0.33
CUX1-218ENST00000560541 TMOD3Q9NYL9 352 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 ADAMTSL3P82987 1691 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 IFIT3O14879 490 aaKnown RBP12.97□□□□□ -0.33
CUX1-218ENST00000560541 SEMA3FQ13275 785 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 NTRK3Q16288 839 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 CCDC102BQ68D86 513 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 EPC1Q9H2F5 836 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 LY9Q9HBG7 655 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 PPP6R2O75170 966 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 IL2RBP14784 551 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 CLCN6P51797 869 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 SATB1Q01826 763 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 CCDC93Q567U6 631 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 IGDCC4Q8TDY8 1250 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 INTS13Q9NVM9 706 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 ZSWIM5Q9P217 1185 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 SLC12A7Q9Y666 1083 aa12.96□□□□□ -0.33
CUX1-218ENST00000560541 MYO5AQ9Y4I1 1855 aaKnown RBP12.96□□□□□ -0.34
CUX1-218ENST00000560541 ANKRD18BA2A2Z9 1011 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 VSTM4Q8IW00 320 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 ARMT1Q9H993 441 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 EPB41L4AQ9HCS5 686 aaPredicted RBP12.95□□□□□ -0.34
CUX1-218ENST00000560541 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.95□□□□□ -0.34
CUX1-218ENST00000560541 TACC3Q9Y6A5 838 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 C4AP0C0L4 1744 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 C4BP0C0L5 1744 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 PRKAB2O43741 272 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 MBD4O95243 580 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 TRIM65Q6PJ69 517 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 MAGEB6Q8N7X4 407 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 NAPBQ9H115 298 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 TRMT112Q9UI30 125 aaKnown RBP12.95□□□□□ -0.34
CUX1-218ENST00000560541 TBC1D2BQ9UPU7 963 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 WDR19Q8NEZ3 1342 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 IRS4O14654 1257 aaPredicted RBP12.95□□□□□ -0.34
CUX1-218ENST00000560541 POLR2DO15514 142 aaKnown RBP12.95□□□□□ -0.34
CUX1-218ENST00000560541 CBFA2T2O43439 604 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 ADKP55263 362 aaKnown RBP12.95□□□□□ -0.34
CUX1-218ENST00000560541 CTSWP56202 376 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 FMR1Q06787 632 aaKnown RBP eCLIP12.95□□□□□ -0.344e-6■■■■□ 21.6
CUX1-218ENST00000560541 SSRP1Q08945 709 aaKnown RBP12.95□□□□□ -0.34
CUX1-218ENST00000560541 NLRP10Q86W26 655 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 MNS1Q8NEH6 495 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 STRBPQ96SI9 672 aaKnown RBP12.95□□□□□ -0.34
CUX1-218ENST00000560541 CARD6Q9BX69 1037 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 FBXO3Q9UK99 471 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 SUFUQ9UMX1 484 aa12.95□□□□□ -0.34
CUX1-218ENST00000560541 H2AFXP16104 143 aaPredicted RBP12.94□□□□□ -0.34
CUX1-218ENST00000560541 NR5A1Q13285 461 aa12.94□□□□□ -0.34
CUX1-218ENST00000560541 DIS3L2Q8IYB7 885 aaKnown RBP12.94□□□□□ -0.34
CUX1-218ENST00000560541 KRI1Q8N9T8 703 aaKnown RBP12.94□□□□□ -0.34
CUX1-218ENST00000560541 UBXN4Q92575 508 aa12.94□□□□□ -0.34
CUX1-218ENST00000560541 CXorf56Q9H5V9 222 aa12.94□□□□□ -0.34
CUX1-218ENST00000560541 CUTAO60888 179 aa12.94□□□□□ -0.34
CUX1-218ENST00000560541 PDE8BO95263 885 aa12.94□□□□□ -0.34
CUX1-218ENST00000560541 TOB1P50616 345 aaPredicted RBP12.94□□□□□ -0.34
CUX1-218ENST00000560541 CTR9Q6PD62 1173 aa12.94□□□□□ -0.34
CUX1-218ENST00000560541 NOSTRINQ8IVI9 506 aa12.94□□□□□ -0.34
CUX1-218ENST00000560541 REXO1L1PQ8IX06 675 aa12.94□□□□□ -0.34
CUX1-218ENST00000560541 TTF1Q15361 905 aaPredicted RBP12.93□□□□□ -0.34
CUX1-218ENST00000560541 UBE3CQ15386 1083 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 USP49Q70CQ1 688 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 IFNL3Q8IZI9 196 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 VGLL2Q8N8G2 317 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 NUP133Q8WUM0 1156 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 PIGBQ92521 554 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 TMEM87BQ96K49 555 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 DESI2Q9BSY9 194 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 SERTAD1Q9UHV2 236 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 MAN1B1Q9UKM7 699 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 NFE2L3Q9Y4A8 694 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 AKAP11Q9UKA4 1901 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 EVA1CP58658 441 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 TRIM28Q13263 835 aaKnown RBP12.93□□□□□ -0.34
CUX1-218ENST00000560541 GIGYF2Q6Y7W6 1299 aaKnown RBP12.93□□□□□ -0.34
CUX1-218ENST00000560541 CADPS2Q86UW7 1296 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 PLA2G12BQ9BX93 195 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 PCDHB6Q9Y5E3 794 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 MAP3K15Q6ZN16 1313 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 MYH7P12883 1935 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 TCRBV5S4A2TA0A5A2 114 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 SEC31AO94979 1220 aaKnown RBP12.93□□□□□ -0.34
CUX1-218ENST00000560541 KCNJ6P48051 423 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 TOGARAM2Q6ZUX3 1019 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 SGSM3Q96HU1 749 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 WDR24Q96S15 920 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 PPP2R2CQ9Y2T4 447 aa12.93□□□□□ -0.34
CUX1-218ENST00000560541 ZBTB12Q9Y330 459 aaPredicted RBP12.93□□□□□ -0.34
CUX1-218ENST00000560541 VWA3AA6NCI4 1184 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 GNG11P61952 73 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 POSTNQ15063 836 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 NKX1-1Q15270 411 aaPredicted RBP12.92□□□□□ -0.34
CUX1-218ENST00000560541 TMEM139Q8IV31 216 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 MIGA1Q8NAN2 632 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 OXER1Q8TDS5 423 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 DEF6Q9H4E7 631 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 SEC31BQ9NQW1 1179 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms