RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 MCM5P33992 734 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 NF2P35240 595 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 BECN1Q14457 450 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 ANKRD1Q15327 319 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 SLC4A8Q2Y0W8 1093 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 TSGA10IPQ3SY00 556 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 PPP4R3BQ5MIZ7 849 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 C12orf60Q5U649 245 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 ANGEL2Q5VTE6 544 aaKnown RBP13.23□□□□□ -0.29
SHMT2-220ENST00000555634 IQCA1Q86XH1 822 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 TRPM4Q8TD43 1214 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 ZC3H15Q8WU90 426 aaKnown RBP13.23□□□□□ -0.29
SHMT2-220ENST00000555634 ZBED3Q96IU2 234 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-220ENST00000555634 NEK1Q96PY6 1258 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 UBAC1Q9BSL1 405 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 TM6SF1Q9BZW5 370 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 HERC5Q9UII4 1024 aaKnown RBP13.23□□□□□ -0.29
SHMT2-220ENST00000555634 PALD1Q9ULE6 856 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 UTRNP46939 3433 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 TRPM7Q96QT4 1865 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 SHTN1A0MZ66 631 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 FOXP2O15409 715 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 MCM2P49736 904 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 CTDSPL2Q05D32 466 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 NFIAQ12857 509 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 DCAF15Q66K64 600 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 HSCBQ8IWL3 235 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 ZNF444Q8N0Y2 327 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-220ENST00000555634 KCNB2Q92953 911 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 DDX4Q9NQI0 724 aaKnown RBP13.22□□□□□ -0.29
SHMT2-220ENST00000555634 FAM198AQ9UFP1 575 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 CLEC11AQ9Y240 323 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 PCDHAC2Q9Y5I4 1007 aa13.22□□□□□ -0.29
SHMT2-220ENST00000555634 WDR19Q8NEZ3 1342 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 TSPY2A6NKD2 308 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 ORC4O43929 436 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 RANBP6O60518 1105 aaKnown RBP13.21□□□□□ -0.29
SHMT2-220ENST00000555634 TSPY3P0CV98 308 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 TSPY8P0CW00 308 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 SUPT20HL1Q3ZLR7 823 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 CCDC178Q5BJE1 867 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 C16orf86Q6ZW13 317 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 TBC1D10CQ8IV04 446 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 TAF1DQ9H5J8 278 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-220ENST00000555634 MKRN1Q9UHC7 482 aaKnown RBP13.21□□□□□ -0.29
SHMT2-220ENST00000555634 OTOFQ9HC10 1997 aa13.21□□□□□ -0.29
SHMT2-220ENST00000555634 GREB1LQ9C091 1923 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-220ENST00000555634 NEDD4P46934 1319 aa13.2□□□□□ -0.3
SHMT2-220ENST00000555634 NEK4P51957 841 aa13.2□□□□□ -0.3
SHMT2-220ENST00000555634 RASA3Q14644 834 aa13.2□□□□□ -0.3
SHMT2-220ENST00000555634 RUFY3Q7L099 469 aa13.2□□□□□ -0.3
SHMT2-220ENST00000555634 FOXP4Q8IVH2 680 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-220ENST00000555634 STK11IPQ8N1F8 1099 aa13.2□□□□□ -0.3
SHMT2-220ENST00000555634 DEFB129Q9H1M3 183 aa13.2□□□□□ -0.3
SHMT2-220ENST00000555634 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.2□□□□□ -0.3
SHMT2-220ENST00000555634 CNTNAP1P78357 1384 aa13.2□□□□□ -0.3
SHMT2-220ENST00000555634 CYP2D7A0A087X1C5 515 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 B4E1Z4 1266 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 EGFRP00533 1210 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 CYP2D6P10635 497 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 RPS6KB1P23443 525 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 DHX32Q7L7V1 743 aaKnown RBP13.19□□□□□ -0.3
SHMT2-220ENST00000555634 KRT26Q7Z3Y9 468 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 RASEFQ8IZ41 740 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 ZNF526Q8TF50 670 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-220ENST00000555634 CHMP4CQ96CF2 233 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 IL17RAQ96F46 866 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 TMEM87BQ96K49 555 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 CCDC17Q96LX7 622 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 MTA3Q9BTC8 594 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 UPF3BQ9BZI7 483 aaKnown RBP13.19□□□□□ -0.3
SHMT2-220ENST00000555634 TMEM39BQ9GZU3 492 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 CABP5Q9NP86 173 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 TSHZ2Q9NRE2 1034 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 PDRG1Q9NUG6 133 aa13.19□□□□□ -0.3
SHMT2-220ENST00000555634 PAPPA2Q9BXP8 1791 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 MYH6P13533 1939 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 MPHOSPH10O00566 681 aaKnown RBP13.18□□□□□ -0.3
SHMT2-220ENST00000555634 PRC1O43663 620 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 KDM4AO75164 1064 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 PLCD1P51178 756 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 SYNE3Q6ZMZ3 975 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 NFXL1Q6ZNB6 911 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 LDHDQ86WU2 507 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 GPBP1L1Q9HC44 474 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-220ENST00000555634 ZSWIM6Q9HCJ5 1215 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 PLIN4Q96Q06 1357 aa13.18□□□□□ -0.3
SHMT2-220ENST00000555634 DDTLA6NHG4 134 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-220ENST00000555634 PRDM1O75626 825 aa13.17□□□□□ -0.3
SHMT2-220ENST00000555634 HSP90AA1P07900 732 aaKnown RBP13.17□□□□□ -0.3
SHMT2-220ENST00000555634 CDK8P49336 464 aa13.17□□□□□ -0.3
SHMT2-220ENST00000555634 CDC37L1Q7L3B6 337 aa13.17□□□□□ -0.3
SHMT2-220ENST00000555634 ZNF341Q9BYN7 854 aa13.17□□□□□ -0.3
SHMT2-220ENST00000555634 RRAGCQ9HB90 399 aa13.17□□□□□ -0.3
SHMT2-220ENST00000555634 CCDC69A6NI79 296 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 IFIT3O14879 490 aaKnown RBP13.16□□□□□ -0.3
SHMT2-220ENST00000555634 PPP1R12BO60237 982 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-220ENST00000555634 TBC1D12O60347 775 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 WTAPQ15007 396 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 ADCK5Q3MIX3 580 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms