RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ALS2Q96Q42 1657 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 UFL1O94874 794 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 SERPINC1P01008 464 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 ERCC3P19447 782 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 ARID4AP29374 1257 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-215ENST00000552823 SNW1Q13573 536 aaKnown RBP6.45□□□□□ -1.38
LIMA1-215ENST00000552823 STX1AQ16623 288 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 DOK7Q18PE1 504 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 UVSSAQ2YD98 709 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 FANCBQ8NB91 859 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 ESR2Q92731 530 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 RPGRQ92834 1020 aaKnown RBP6.45□□□□□ -1.38
LIMA1-215ENST00000552823 FAM217BQ9NTX9 383 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-215ENST00000552823 ANO10Q9NW15 660 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 NLRP5P59047 1200 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 TFAP4Q01664 338 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 LONRF3Q496Y0 759 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 IQCA1Q86XH1 822 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 CNBD1Q8NA66 436 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 KRT23Q9C075 422 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 SERTAD1Q9UHV2 236 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 KIF1AQ12756 1690 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 MRC1P22897 1456 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 MROH7-TTC4A0A0A0MT08 1334 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ZNF804BA4D1E1 1349 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ZMYM6O95789 1325 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 CDKL5O76039 1030 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 MCM7P33993 719 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 SCNN1DP51172 638 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 CFAP100Q494V2 611 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 EARS2Q5JPH6 523 aaKnown RBP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 PIK3AP1Q6ZUJ8 805 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 CATIPQ7Z7H3 387 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 SEPT12Q8IYM1 358 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 BLZF1Q9H2G9 400 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 COL18A1P39060 1754 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ZNF142P52746 1687 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 TNS2Q63HR2 1409 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 VWA3AA6NCI4 1184 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 USP27XA6NNY8 438 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ADAMTS3O15072 1205 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ADALQ6DHV7 355 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 SHC4Q6S5L8 630 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ENAHQ8N8S7 591 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ZNF384Q8TF68 577 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ZNF622Q969S3 477 aaKnown RBP eCLIP6.44□□□□□ -1.386e-8■□□□□ 9.1
LIMA1-215ENST00000552823 EPSTI1Q96J88 318 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 TMEM87BQ96K49 555 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 RNF216Q9NWF9 866 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 FBXO3Q9UK99 471 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ELP1O95163 1332 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 FAM196BA6NMK8 535 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 WNT7AO00755 349 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 RBM5P52756 815 aaKnown RBP eCLIP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 CACNB3P54284 484 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 CTCFLQ8NI51 663 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 KCNG4Q8TDN1 519 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 SH3RF3Q8TEJ3 882 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 XPO4Q9C0E2 1151 aaKnown RBP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 UBA5Q9GZZ9 404 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 ALDH8A1Q9H2A2 487 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-215ENST00000552823 PRDM10Q9NQV6 1147 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 RTEL1Q9NZ71 1219 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 PCDHA5Q9Y5H7 936 aa6.44□□□□□ -1.38
LIMA1-215ENST00000552823 PHRF1Q9P1Y6 1649 aaKnown RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 LDHBP07195 334 aaKnown RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 PRR29P0C7W0 189 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 SKILP12757 684 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 TNNT1P13805 278 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 GTF2IP78347 998 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 CTR9Q6PD62 1173 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 NBPF11Q86T75 865 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 FMR1NBQ8N0W7 255 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 STAG2Q8N3U4 1231 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 NOL10Q9BSC4 688 aaKnown RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 CRNKL1Q9BZJ0 848 aaKnown RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 LRRC4BQ9NT99 713 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 BSDC1Q9NW68 430 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 KIAA1468Q9P260 1216 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 KCNH3Q9ULD8 1083 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 FAM170AA1A519 330 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 MPHOSPH10O00566 681 aaKnown RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 NTRK3Q16288 839 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 HEATR3Q7Z4Q2 680 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 ZNF444Q8N0Y2 327 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 CRACR2BQ8N4Y2 399 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 DPF2Q92785 391 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 ZSCAN10Q96SZ4 725 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 CDCA7Q9BWT1 371 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 AGXT2Q9BYV1 514 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 RNF41Q9H4P4 317 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 SCAF8Q9UPN6 1271 aaKnown RBP6.43□□□□□ -1.38
LIMA1-215ENST00000552823 TAF1P21675 1872 aa6.43□□□□□ -1.38
LIMA1-215ENST00000552823 SPDYE4A6NLX3 237 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 IGSF3O75054 1194 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 RPS6KA4O75676 772 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 HSPA1LP34931 641 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 TCP10Q12799 353 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms