RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 WWC2Q6AWC2 1192 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 NDUFA8P51970 172 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 TNIP1Q15025 636 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 UBE3CQ15386 1083 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 FANCBQ8NB91 859 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 WDR66Q8TBY9 1149 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 FBXO3Q9UK99 471 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 ERCC3P19447 782 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 ARID5AQ03989 594 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 UBXN1Q04323 297 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 NRKQ7Z2Y5 1582 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 KRT79Q5XKE5 535 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 USP8P40818 1118 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 IQCEQ6IPM2 695 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 APOA5Q6Q788 366 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 GPIHBP1Q8IV16 184 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 FAM114A1Q8IWE2 563 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 CRACR2AQ9BSW2 395 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 IL25Q9H293 177 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 KIAA1468Q9P260 1216 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 CTNND2Q9UQB3 1225 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 KIF20AO95235 890 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 SERTAD1Q9UHV2 236 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 MROH2AA6NES4 1674 aa18.44■□□□□ 0.54
CUX1-213ENST00000549414 CDR1P51861 262 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 RBM17Q96I25 401 aaKnown RBP18.43■□□□□ 0.54
CUX1-213ENST00000549414 XPO4Q9C0E2 1151 aaKnown RBP18.43■□□□□ 0.54
CUX1-213ENST00000549414 STK32BQ9NY57 414 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 PIH1D3Q9NQM4 214 aaKnown RBP18.43■□□□□ 0.54
CUX1-213ENST00000549414 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.43■□□□□ 0.548e-7■■□□□ 12.7
CUX1-213ENST00000549414 CCDC66A2RUB6 948 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 SLU7O95391 586 aaKnown RBP18.43■□□□□ 0.54
CUX1-213ENST00000549414 ADD2P35612 726 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 NLRP12P59046 1061 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 DYNLL1P63167 89 aaKnown RBP18.43■□□□□ 0.54
CUX1-213ENST00000549414 NOSTRINQ8IVI9 506 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 KIAA1210Q9ULL0 1709 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 ATP10DQ9P241 1426 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 BLZF1Q9H2G9 400 aa18.43■□□□□ 0.54
CUX1-213ENST00000549414 ZMYM6O95789 1325 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 CCDC175P0C221 793 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 TCP10Q12799 353 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 SUSD4Q5VX71 490 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 RIOK3O14730 519 aaKnown RBP18.42■□□□□ 0.54
CUX1-213ENST00000549414 TXKP42681 527 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 MCAMP43121 646 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 SSR1P43307 286 aaKnown RBP18.42■□□□□ 0.54
CUX1-213ENST00000549414 NOP2P46087 812 aaKnown RBP18.42■□□□□ 0.54
CUX1-213ENST00000549414 PTPRUQ92729 1446 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 TOB2Q14106 344 aaPredicted RBP18.42■□□□□ 0.54
CUX1-213ENST00000549414 POSTNQ15063 836 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 ERFEQ4G0M1 354 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 PAF1Q8N7H5 531 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 SMARCC2Q8TAQ2 1214 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 SCLT1Q96NL6 688 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 ATG3Q9NT62 314 aa18.42■□□□□ 0.54
CUX1-213ENST00000549414 CARMIL3Q8ND23 1372 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 CYP2D7A0A087X1C5 515 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 TBCAO75347 108 aaKnown RBP18.41■□□□□ 0.54
CUX1-213ENST00000549414 LCORLQ8N3X6 602 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 GJA3Q9Y6H8 435 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 PAFAH1B1P43034 410 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 GTF2IP78347 998 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 BAG1Q99933 345 aaPredicted RBP18.41■□□□□ 0.54
CUX1-213ENST00000549414 DLC1Q96QB1 1528 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 NCAPD2Q15021 1401 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 RASGRF1Q13972 1273 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 MFSD14BQ5SR56 506 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 SYCP3Q8IZU3 236 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 INCENPQ9NQS7 918 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 GUCA1BQ9UMX6 200 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 WDHD1O75717 1129 aaPredicted RBP18.41■□□□□ 0.54
CUX1-213ENST00000549414 SPAG5Q96R06 1193 aa18.41■□□□□ 0.54
CUX1-213ENST00000549414 ZSCAN10Q96SZ4 725 aaPredicted RBP18.41■□□□□ 0.54
CUX1-213ENST00000549414 CCNT1O60563 726 aaKnown RBP18.4■□□□□ 0.54
CUX1-213ENST00000549414 IGSF3O75054 1194 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 GOLGA8HP0CJ92 632 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.4■□□□□ 0.54
CUX1-213ENST00000549414 QTRT2Q9H974 415 aaKnown RBP18.4■□□□□ 0.54
CUX1-213ENST00000549414 NRBP1Q9UHY1 535 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 MRVI1Q9Y6F6 885 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 TMCO5BA8MYB1 307 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 ARID4AP29374 1257 aaPredicted RBP18.4■□□□□ 0.54
CUX1-213ENST00000549414 IGSF22Q8N9C0 903 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 HDAC9Q9UKV0 1011 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 GOLGA6L10A6NI86 522 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 VPS36Q86VN1 386 aa18.4■□□□□ 0.54
CUX1-213ENST00000549414 SPDYE3A6NKU9 549 aa18.39■□□□□ 0.54
CUX1-213ENST00000549414 PUF60Q9UHX1 559 aaKnown RBP18.39■□□□□ 0.54
CUX1-213ENST00000549414 MYO6Q9UM54 1294 aa18.39■□□□□ 0.54
CUX1-213ENST00000549414 GPKOWQ92917 476 aaPredicted RBP eCLIP18.39■□□□□ 0.537e-6■□□□□ 10
CUX1-213ENST00000549414 TTC14Q96N46 770 aa18.39■□□□□ 0.53
CUX1-213ENST00000549414 GBP3Q9H0R5 595 aa18.39■□□□□ 0.53
CUX1-213ENST00000549414 SRP68Q9UHB9 627 aaKnown RBP18.39■□□□□ 0.53
CUX1-213ENST00000549414 PTPN21Q16825 1174 aa18.39■□□□□ 0.53
CUX1-213ENST00000549414 ERMNQ8TAM6 284 aa18.39■□□□□ 0.53
CUX1-213ENST00000549414 CWC15Q9P013 229 aaKnown RBP18.39■□□□□ 0.53
CUX1-213ENST00000549414 ZNF569Q5MCW4 686 aa18.38■□□□□ 0.53
CUX1-213ENST00000549414 FCHSD1Q86WN1 690 aa18.38■□□□□ 0.53
CUX1-213ENST00000549414 ZSWIM5Q9P217 1185 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms