RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 KCNF1Q9H3M0 494 aa16.12■□□□□ 0.17
MSH2-206ENST00000543555 MINDY4BA8MYZ0 360 aa16.12■□□□□ 0.17
MSH2-206ENST00000543555 GOLGA6L19H0YKK7 550 aa16.12■□□□□ 0.17
MSH2-206ENST00000543555 SEMA3EO15041 775 aa16.12■□□□□ 0.17
MSH2-206ENST00000543555 UBE2Q2LH0YL09 131 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 CMA1P23946 247 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 RCAN1P53805 252 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.11■□□□□ 0.17
MSH2-206ENST00000543555 WASF1Q92558 559 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 TAOK2Q9UL54 1235 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 NPHP1O15259 732 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 KLRK1P26718 216 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 NOLC1Q14978 699 aaKnown RBP eCLIP16.11■□□□□ 0.17
MSH2-206ENST00000543555 ZNF384Q8TF68 577 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 DYNLL1P63167 89 aaKnown RBP16.11■□□□□ 0.17
MSH2-206ENST00000543555 SF3B2Q13435 895 aaKnown RBP16.11■□□□□ 0.17
MSH2-206ENST00000543555 ESR2Q92731 530 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 ERCC4Q92889 916 aaPredicted RBP16.11■□□□□ 0.17
MSH2-206ENST00000543555 UBAC1Q9BSL1 405 aa16.11■□□□□ 0.17
MSH2-206ENST00000543555 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.11■□□□□ 0.17
MSH2-206ENST00000543555 A0A087WWV3 80 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 PPP6R2O75170 966 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 WDHD1O75717 1129 aaPredicted RBP16.1■□□□□ 0.17
MSH2-206ENST00000543555 SARM1Q6SZW1 724 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 BRIP1Q9BX63 1249 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 CCDC196A0A1B0GTZ2 297 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 PLSCR1O15162 318 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 PFKFB1P16118 471 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 MARCKSP29966 332 aaPredicted RBP16.1■□□□□ 0.17
MSH2-206ENST00000543555 PTPAQ15257 358 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 TPTE2Q6XPS3 522 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 TRIM22Q8IYM9 498 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 ZNF654Q8IZM8 581 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 MAP3K14Q99558 947 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 ANKRD2Q9GZV1 360 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 SPTLC3Q9NUV7 552 aa16.1■□□□□ 0.17
MSH2-206ENST00000543555 MROH7-TTC4A0A0A0MT08 1334 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 PDS5AQ29RF7 1337 aaKnown RBP16.09■□□□□ 0.17
MSH2-206ENST00000543555 ZNF202O95125 648 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 GUCY1A2P33402 732 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 NBPF11Q86T75 865 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 CEP57L1Q8IYX8 460 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 JMYQ8N9B5 988 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 KIAA1468Q9P260 1216 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 SMIM22K7EJ46 135 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 PTGS1P23219 599 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 SEC23AQ15436 765 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 SLC27A3Q5K4L6 730 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 DHX40Q8IX18 779 aaKnown RBP16.09■□□□□ 0.17
MSH2-206ENST00000543555 C17orf53Q8N3J3 647 aaPredicted RBP16.09■□□□□ 0.17
MSH2-206ENST00000543555 TNKSO95271 1327 aa16.09■□□□□ 0.17
MSH2-206ENST00000543555 BECN2A8MW95 431 aa16.08■□□□□ 0.17
MSH2-206ENST00000543555 DRC7Q8IY82 874 aa16.08■□□□□ 0.17
MSH2-206ENST00000543555 CRACR2BQ8N4Y2 399 aaPredicted RBP16.08■□□□□ 0.17
MSH2-206ENST00000543555 FANCBQ8NB91 859 aa16.08■□□□□ 0.17
MSH2-206ENST00000543555 KIAA1524Q8TCG1 905 aa16.08■□□□□ 0.17
MSH2-206ENST00000543555 PYCARDQ9ULZ3 195 aa16.08■□□□□ 0.17
MSH2-206ENST00000543555 DUOX1Q9NRD9 1551 aa16.08■□□□□ 0.16
MSH2-206ENST00000543555 MMP1P03956 469 aa16.08■□□□□ 0.16
MSH2-206ENST00000543555 HIBADHP31937 336 aaKnown RBP16.08■□□□□ 0.16
MSH2-206ENST00000543555 COL23A1Q86Y22 540 aaPredicted RBP16.08■□□□□ 0.16
MSH2-206ENST00000543555 NUP133Q8WUM0 1156 aa16.08■□□□□ 0.16
MSH2-206ENST00000543555 NSUN4Q96CB9 384 aaKnown RBP16.08■□□□□ 0.16
MSH2-206ENST00000543555 NAT10Q9H0A0 1025 aaKnown RBP16.08■□□□□ 0.16
MSH2-206ENST00000543555 DEXIO95424 95 aa16.08■□□□□ 0.16
MSH2-206ENST00000543555 CDC25BP30305 580 aa16.08■□□□□ 0.16
MSH2-206ENST00000543555 CCDC186Q7Z3E2 898 aa16.08■□□□□ 0.16
MSH2-206ENST00000543555 NOSTRINQ8IVI9 506 aa16.08■□□□□ 0.16
MSH2-206ENST00000543555 CAMKK2Q96RR4 588 aa16.08■□□□□ 0.16
MSH2-206ENST00000543555 SAFBQ15424 915 aaKnown RBP eCLIP16.07■□□□□ 0.16
MSH2-206ENST00000543555 SLC51AQ86UW1 340 aa16.07■□□□□ 0.16
MSH2-206ENST00000543555 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.07■□□□□ 0.16
MSH2-206ENST00000543555 HPSEQ9Y251 543 aa16.07■□□□□ 0.16
MSH2-206ENST00000543555 CYP2D7A0A087X1C5 515 aa16.07■□□□□ 0.16
MSH2-206ENST00000543555 SLC3A2P08195 630 aaKnown RBP16.07■□□□□ 0.16
MSH2-206ENST00000543555 MECOMQ03112 1051 aa16.07■□□□□ 0.16
MSH2-206ENST00000543555 CMTR1Q8N1G2 835 aaKnown RBP16.07■□□□□ 0.16
MSH2-206ENST00000543555 FGRP09769 529 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 PCP11498 1178 aaKnown RBP16.06■□□□□ 0.16
MSH2-206ENST00000543555 TM4SF1P30408 202 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 SHC4Q6S5L8 630 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 DIS3L2Q8IYB7 885 aaKnown RBP16.06■□□□□ 0.16
MSH2-206ENST00000543555 CCDC82Q8N4S0 544 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 TIGD1Q96MW7 591 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 ZSCAN10Q96SZ4 725 aaPredicted RBP16.06■□□□□ 0.16
MSH2-206ENST00000543555 CLIP2Q9UDT6 1046 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 FAM237AA0A1B0GTK4 181 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 BTBD18B2RXH4 712 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 PPP2R5BQ15173 497 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 ZRSR1Q15695 479 aaKnown RBP16.06■□□□□ 0.16
MSH2-206ENST00000543555 CTR9Q6PD62 1173 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 AOPEPQ8N6M6 819 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 ENAHQ8N8S7 591 aaPredicted RBP16.06■□□□□ 0.16
MSH2-206ENST00000543555 MRFAP1L1Q96HT8 127 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 NRBP1Q9UHY1 535 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 KCNJ14Q9UNX9 436 aa16.06■□□□□ 0.16
MSH2-206ENST00000543555 SYKP43405 635 aa16.05■□□□□ 0.16
MSH2-206ENST00000543555 NFIXQ14938 502 aa16.05■□□□□ 0.16
MSH2-206ENST00000543555 DNTTIP2Q5QJE6 756 aaKnown RBP16.05■□□□□ 0.16
MSH2-206ENST00000543555 FBXW7Q969H0 707 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms