RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 APPBP2Q92624 585 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 ZSCAN31Q96LW9 406 aaPredicted RBP9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 TRAIPQ9BWF2 469 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 TRIM5Q9C035 493 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 SH2B1Q9NRF2 756 aaPredicted RBP9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 COL1A1P02452 1464 aaPredicted RBP9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 POLR3GO15318 223 aaPredicted RBP9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 RASGRF1Q13972 1273 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 CAMK4Q16566 473 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 LUZP1Q86V48 1076 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 CD151P48509 253 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 UBE2HP62256 183 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 RBM6P78332 1123 aaKnown RBP9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 MAP9Q49MG5 647 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 KRBA2Q6ZNG9 492 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 MICALL1Q8N3F8 863 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 ERCC4Q92889 916 aaPredicted RBP9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 TCEANC2Q96MN5 208 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 CDC5LQ99459 802 aaKnown RBP9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 NYXQ9GZU5 481 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 ZNF804BA4D1E1 1349 aa9.19□□□□□ -0.94
PDLIM5-221ENST00000542407 WTIPA6NIX2 430 aaPredicted RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 ZPR1O75312 459 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 CCDC192P0DO97 292 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 TM4SF1P30408 202 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 TTF1Q15361 905 aaPredicted RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 LRRFIP1Q32MZ4 808 aaKnown RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 FAM196AQ6ZSG2 479 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 CCDC91Q7Z6B0 441 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 SPATA5Q8NB90 893 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 NEK11Q8NG66 645 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 CXorf38Q8TB03 319 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 CELF1Q92879 486 aaKnown RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 POM121Q96HA1 1249 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 NEK1Q96PY6 1258 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 SETDB2Q96T68 719 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 SKILP12757 684 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 NAT1P18440 290 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 NAP1L1P55209 391 aaKnown RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 INHBEP58166 350 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 TRDNQ13061 729 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 UBE3CQ15386 1083 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 TTLL5Q6EMB2 1281 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 CCDC83Q8IWF9 413 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 TRMT1Q9NXH9 659 aaKnown RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 WWC3Q9ULE0 1092 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 ANKRD33BA6NCL7 494 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 BCAMP50895 628 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 GSCP56915 257 aaPredicted RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 EXOSC10Q01780 885 aaKnown RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 PDE4DQ08499 809 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 ANKRD18AQ8IVF6 992 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 C10orf67Q8IYJ2 551 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 KLHL23Q8NBE8 558 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 AGXT2Q9BYV1 514 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 RANBP17Q9H2T7 1088 aaKnown RBP9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 FRMD4BQ9Y2L6 1034 aa9.18□□□□□ -0.94
PDLIM5-221ENST00000542407 CARMIL3Q8ND23 1372 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 E7EWF7 191 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 GPAA1O43292 621 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 PDE6AP16499 860 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 CYP2C19P33261 490 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 ANKRD1Q15327 319 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 ZSCAN25Q6NSZ9 544 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 KRT27Q7Z3Y8 459 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 IRAK4Q9NWZ3 460 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 MINPP1Q9UNW1 487 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 ZNF532Q9HCE3 1301 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 PES1O00541 588 aaKnown RBP9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 ZSCAN26Q16670 478 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 WASHC4Q2M389 1173 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 TRAPPC3LQ5T215 181 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 SLC9C2Q5TAH2 1124 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 CKAP2LQ8IYA6 745 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 NECAB1Q8N987 351 aa9.17□□□□□ -0.94
PDLIM5-221ENST00000542407 TIAM2Q8IVF5 1701 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 IRS2Q9Y4H2 1338 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 CARNS1A5YM72 827 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 FGAP02671 866 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 FAM163BP0C2L3 166 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 NFIXQ14938 502 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 SLC27A3Q5K4L6 730 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 DRC1Q96MC2 740 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 CACNA1SQ13698 1873 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 SYT1P21579 422 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 GJB2P29033 226 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 UBE4AQ14139 1066 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 PTPN14Q15678 1187 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 Q6ZUG5 572 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 JRKLQ9Y4A0 524 aa9.16□□□□□ -0.94
PDLIM5-221ENST00000542407 USP27XA6NNY8 438 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 TRIM66O15016 1216 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 IDH1O75874 414 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 RFC4P35249 363 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 BMS1Q14692 1282 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 TPTE2Q6XPS3 522 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 DHX32Q7L7V1 743 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 FBXL16Q8N461 479 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms