RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 RPS12P25398 132 aaKnown RBP8.67□□□□□ -1.02
VPS53-205ENST00000541903 MMP14P50281 582 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 EVCP57679 992 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 ST3GAL1Q11201 340 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 WTAPQ15007 396 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 SYNE3Q6ZMZ3 975 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 IQCA1Q86XH1 822 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 ZNF274Q96GC6 653 aaPredicted RBP8.67□□□□□ -1.02
VPS53-205ENST00000541903 GMLQ99445 158 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 IDI2Q9BXS1 227 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 OSBPL5Q9H0X9 879 aaPredicted RBP8.67□□□□□ -1.02
VPS53-205ENST00000541903 MKNK2Q9HBH9 465 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 GPHNQ9NQX3 736 aaPredicted RBP8.67□□□□□ -1.02
VPS53-205ENST00000541903 ZSWIM5Q9P217 1185 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 ZBTB12Q9Y330 459 aaPredicted RBP8.67□□□□□ -1.02
VPS53-205ENST00000541903 ZNF646O15015 1829 aaPredicted RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 ARFGEF1Q9Y6D6 1849 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 TNKSO95271 1327 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 SPDYE2BA6NHP3 402 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 SMIM22K7EJ46 135 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 MYO1BO43795 1136 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 DHX16O60231 1041 aaKnown RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 NPM3O75607 178 aaKnown RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 SPDYE6P0CI01 402 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 LMNB1P20700 586 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 PDIA3P30101 505 aaKnown RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 LIFRP42702 1097 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 PLCD1P51178 756 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 EVX2Q03828 476 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 CCDC178Q5BJE1 867 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 C16orf86Q6ZW13 317 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 SGMS1Q86VZ5 419 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 ZNF444Q8N0Y2 327 aaPredicted RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 TMTC2Q8N394 836 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 IGDCC4Q8TDY8 1250 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 DYNLL2Q96FJ2 89 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 ZSCAN10Q96SZ4 725 aaPredicted RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 ZKSCAN3Q9BRR0 538 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 LLPHQ9BRT6 129 aaKnown RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 LY9Q9HBG7 655 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 DDX4Q9NQI0 724 aaKnown RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 PCDHAC2Q9Y5I4 1007 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 SLC12A7Q9Y666 1083 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 PSME4Q14997 1843 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 ADAMTSL1Q8N6G6 1762 aa8.66□□□□□ -1.02
VPS53-205ENST00000541903 DDX60LQ5H9U9 1706 aaKnown RBP8.66□□□□□ -1.02
VPS53-205ENST00000541903 GOLGA8AA7E2F4 631 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 FZD9O00144 591 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 CPLX1O14810 134 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 ZBTB43O43298 467 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 ENTPD3O75355 529 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 TSPY3P0CV98 308 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 TSPY8P0CW00 308 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 GJB2P29033 226 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 CDK8P49336 464 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 METAP2P50579 478 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS53-205ENST00000541903 PRELPP51888 382 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 RCAN1P53805 252 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 CACNB3P54284 484 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 CCT2P78371 535 aaKnown RBP8.65□□□□□ -1.02
VPS53-205ENST00000541903 SCRN1Q12765 414 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 NFIAQ12857 509 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 SPDYE2Q495Y8 402 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 IFIT1BQ5T764 474 aaKnown RBP8.65□□□□□ -1.02
VPS53-205ENST00000541903 CPLX2Q6PUV4 134 aaKnown RBP8.65□□□□□ -1.02
VPS53-205ENST00000541903 MICU3Q86XE3 530 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 ZSCAN29Q8IWY8 852 aaPredicted RBP8.65□□□□□ -1.02
VPS53-205ENST00000541903 MTMR14Q8NCE2 650 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 SLC44A5Q8NCS7 719 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 NKX2-3Q8TAU0 364 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 PRMT6Q96LA8 375 aaPredicted RBP8.65□□□□□ -1.02
VPS53-205ENST00000541903 TRIM34Q9BYJ4 488 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 DHX36Q9H2U1 1008 aaKnown RBP8.65□□□□□ -1.02
VPS53-205ENST00000541903 TDRD3Q9H7E2 651 aaKnown RBP8.65□□□□□ -1.02
VPS53-205ENST00000541903 SWAP70Q9UH65 585 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 SERPINB13Q9UIV8 391 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 TAOK2Q9UL54 1235 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 BRPF3Q9ULD4 1205 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 KIF3AQ9Y496 699 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 GJA3Q9Y6H8 435 aa8.65□□□□□ -1.02
VPS53-205ENST00000541903 COL2A1P02458 1487 aaPredicted RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 ZNF541Q9H0D2 1346 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 PTPDC1A2A3K4 754 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 CDKL5O76039 1030 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 PDIA4P13667 645 aaKnown RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 RASA1P20936 1047 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 PDCP20941 246 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 GMPSP49915 693 aaPredicted RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 ZNF280AP59817 542 aaPredicted RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 HMGN5P82970 282 aaKnown RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 TFAP4Q01664 338 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 TCP10Q12799 353 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 RAB3GAP1Q15042 981 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 SEC23AQ15436 765 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 FAM47AQ5JRC9 791 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 APOA5Q6Q788 366 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 RAB11FIP4Q86YS3 637 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 CRACR2BQ8N4Y2 399 aaPredicted RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 ENAHQ8N8S7 591 aaPredicted RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 FAM184AQ8NB25 1140 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms