RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 NEFMP07197 916 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 FAM87AP0C7U9 286 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 ZNF252P-AS1Q0IIN9 211 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 PPM1JQ5JR12 505 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 TTLL10Q6ZVT0 673 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 C12orf40Q86WS4 652 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 LRRC56Q8IYG6 542 aaPredicted RBP7.22□□□□□ -1.25
PRKDC-210ENST00000541488 DUSP9Q99956 384 aaKnown RBP7.22□□□□□ -1.25
PRKDC-210ENST00000541488 CEP44Q9C0F1 390 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 PICK1Q9NRD5 415 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 FAM8A1Q9UBU6 413 aa7.22□□□□□ -1.25
PRKDC-210ENST00000541488 LEFTY1O75610 366 aa7.21□□□□□ -1.26
PRKDC-210ENST00000541488 RAP1GAPP47736 663 aa7.21□□□□□ -1.26
PRKDC-210ENST00000541488 HNRNPUQ00839 825 aaKnown RBP eCLIP7.21□□□□□ -1.26
PRKDC-210ENST00000541488 EAPPQ56P03 285 aaPredicted RBP7.21□□□□□ -1.26
PRKDC-210ENST00000541488 LLGL2Q6P1M3 1020 aa7.21□□□□□ -1.26
PRKDC-210ENST00000541488 ZSCAN18Q8TBC5 510 aaPredicted RBP7.21□□□□□ -1.26
PRKDC-210ENST00000541488 ISL2Q96A47 359 aa7.21□□□□□ -1.26
PRKDC-210ENST00000541488 PCDHA4Q9UN74 947 aa7.21□□□□□ -1.26
PRKDC-210ENST00000541488 GIPC1O14908 333 aa7.2□□□□□ -1.26
PRKDC-210ENST00000541488 EIF4BP23588 611 aaKnown RBP7.2□□□□□ -1.26
PRKDC-210ENST00000541488 MAP3K11Q16584 847 aa7.2□□□□□ -1.26
PRKDC-210ENST00000541488 ZC3H12AQ5D1E8 599 aaKnown RBP7.2□□□□□ -1.26
PRKDC-210ENST00000541488 PCNX4Q63HM2 1172 aa7.2□□□□□ -1.26
PRKDC-210ENST00000541488 FAM181AQ8N9Y4 354 aa7.2□□□□□ -1.26
PRKDC-210ENST00000541488 PPM1HQ9ULR3 514 aa7.2□□□□□ -1.26
PRKDC-210ENST00000541488 SAMM50Q9Y512 469 aa7.2□□□□□ -1.26
PRKDC-210ENST00000541488 SYNGAP1Q96PV0 1343 aa7.2□□□□□ -1.26
PRKDC-210ENST00000541488 PRPF40AO75400 957 aaKnown RBP7.19□□□□□ -1.26
PRKDC-210ENST00000541488 ZSCAN22P10073 491 aaPredicted RBP7.19□□□□□ -1.26
PRKDC-210ENST00000541488 GNA15P30679 374 aa7.19□□□□□ -1.26
PRKDC-210ENST00000541488 OGFOD3Q6PK18 319 aa7.19□□□□□ -1.26
PRKDC-210ENST00000541488 UBE3DQ7Z6J8 389 aa7.19□□□□□ -1.26
PRKDC-210ENST00000541488 SIAH1Q8IUQ4 282 aa7.19□□□□□ -1.26
PRKDC-210ENST00000541488 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.19□□□□□ -1.26
PRKDC-210ENST00000541488 FAM161BQ96MY7 647 aa7.19□□□□□ -1.26
PRKDC-210ENST00000541488 PCOLCE2Q9UKZ9 415 aa7.19□□□□□ -1.26
PRKDC-210ENST00000541488 PRAMEF27A3QJZ7 478 aa7.18□□□□□ -1.26
PRKDC-210ENST00000541488 LRRC10BA6NIK2 292 aa7.18□□□□□ -1.26
PRKDC-210ENST00000541488 RNASE1P07998 156 aaKnown RBP7.18□□□□□ -1.26
PRKDC-210ENST00000541488 CYP27A1Q02318 531 aa7.18□□□□□ -1.26
PRKDC-210ENST00000541488 PTPN11Q06124 597 aaPredicted RBP7.18□□□□□ -1.26
PRKDC-210ENST00000541488 STK11IPQ8N1F8 1099 aa7.18□□□□□ -1.26
PRKDC-210ENST00000541488 TOP6BLQ8N6T0 577 aa7.18□□□□□ -1.26
PRKDC-210ENST00000541488 MBNL3Q9NUK0 354 aaKnown RBP7.18□□□□□ -1.26
PRKDC-210ENST00000541488 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.18□□□□□ -1.26
PRKDC-210ENST00000541488 RAPGEFL1Q9UHV5 662 aa7.18□□□□□ -1.26
PRKDC-210ENST00000541488 ADAMTS6Q9UKP5 1117 aa7.18□□□□□ -1.26
PRKDC-210ENST00000541488 ERVK-24P63145 666 aa7.17□□□□□ -1.26
PRKDC-210ENST00000541488 BNIP3Q12983 259 aa7.17□□□□□ -1.26
PRKDC-210ENST00000541488 LRRC14Q15048 493 aa7.17□□□□□ -1.26
PRKDC-210ENST00000541488 CCDC85BQ15834 202 aaPredicted RBP7.17□□□□□ -1.26
PRKDC-210ENST00000541488 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.17□□□□□ -1.26
PRKDC-210ENST00000541488 RNF214Q8ND24 703 aa7.17□□□□□ -1.26
PRKDC-210ENST00000541488 ELMO3Q96BJ8 720 aa7.17□□□□□ -1.26
PRKDC-210ENST00000541488 U3KQE9 123 aa7.17□□□□□ -1.26
PRKDC-210ENST00000541488 TRIM37O94972 964 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 TSPAN15O95858 294 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 FUT4P22083 530 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 CDK8P49336 464 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 TAGLNQ01995 201 aaKnown RBP7.16□□□□□ -1.26
PRKDC-210ENST00000541488 INPP5AQ14642 412 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 CYP27C1Q4G0S4 372 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 MEI1Q5TIA1 1274 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 TTBK2Q6IQ55 1244 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 ARHGAP27Q6ZUM4 889 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 PLD6Q8N2A8 252 aaKnown RBP7.16□□□□□ -1.26
PRKDC-210ENST00000541488 LRRN4CLQ8ND94 238 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 GZF1Q9H116 711 aaPredicted RBP7.16□□□□□ -1.26
PRKDC-210ENST00000541488 PARP2Q9UGN5 583 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 AK5Q9Y6K8 562 aa7.16□□□□□ -1.26
PRKDC-210ENST00000541488 F6X3S4 739 aa7.15□□□□□ -1.26
PRKDC-210ENST00000541488 SEPT6Q14141 434 aa7.15□□□□□ -1.26
PRKDC-210ENST00000541488 LRFN4Q6PJG9 635 aa7.15□□□□□ -1.26
PRKDC-210ENST00000541488 NPAS4Q8IUM7 802 aa7.15□□□□□ -1.26
PRKDC-210ENST00000541488 DUSP23Q9BVJ7 150 aa7.15□□□□□ -1.26
PRKDC-210ENST00000541488 CYP8B1Q9UNU6 501 aa7.15□□□□□ -1.26
PRKDC-210ENST00000541488 PCDHB5Q9Y5E4 795 aa7.15□□□□□ -1.26
PRKDC-210ENST00000541488 ITIH2P19823 946 aa7.14□□□□□ -1.27
PRKDC-210ENST00000541488 LMNB1P20700 586 aa7.14□□□□□ -1.27
PRKDC-210ENST00000541488 PSMD2Q13200 908 aa7.14□□□□□ -1.27
PRKDC-210ENST00000541488 DNAJC14Q6Y2X3 702 aaPredicted RBP7.14□□□□□ -1.27
PRKDC-210ENST00000541488 PLPPR2Q96GM1 343 aa7.14□□□□□ -1.27
PRKDC-210ENST00000541488 FRMD6Q96NE9 622 aa7.14□□□□□ -1.27
PRKDC-210ENST00000541488 CACNA2D2Q9NY47 1150 aa7.14□□□□□ -1.27
PRKDC-210ENST00000541488 RBAK-RBAKDNI3L0D1 243 aa7.13□□□□□ -1.27
PRKDC-210ENST00000541488 NTF4P34130 210 aa7.13□□□□□ -1.27
PRKDC-210ENST00000541488 CD96P40200 585 aa7.13□□□□□ -1.27
PRKDC-210ENST00000541488 XPCQ01831 940 aaPredicted RBP7.13□□□□□ -1.27
PRKDC-210ENST00000541488 MLANAQ16655 118 aa7.13□□□□□ -1.27
PRKDC-210ENST00000541488 SV2BQ7L1I2 683 aa7.13□□□□□ -1.27
PRKDC-210ENST00000541488 CDC37L1Q7L3B6 337 aa7.13□□□□□ -1.27
PRKDC-210ENST00000541488 CD8BP10966 210 aa7.12□□□□□ -1.27
PRKDC-210ENST00000541488 WIPI1Q5MNZ9 446 aaPredicted RBP7.12□□□□□ -1.27
PRKDC-210ENST00000541488 ZBTB37Q5TC79 503 aa7.12□□□□□ -1.27
PRKDC-210ENST00000541488 GAL3ST3Q96A11 431 aa7.12□□□□□ -1.27
PRKDC-210ENST00000541488 ANKLE2Q86XL3 938 aa7.11□□□□□ -1.27
PRKDC-210ENST00000541488 MISP3Q96FF7 219 aa7.11□□□□□ -1.27
PRKDC-210ENST00000541488 PPP1R16BQ96T49 567 aa7.11□□□□□ -1.27
PRKDC-210ENST00000541488 FBRSQ9HAH7 460 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms