RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 AKAP11Q9UKA4 1901 aa16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 PTPDC1A2A3K4 754 aa16.58■□□□□ 0.25
SFSWAP-210ENST00000541286 POLR3DP05423 398 aaPredicted RBP16.58■□□□□ 0.25
SFSWAP-210ENST00000541286 SLC9C2Q5TAH2 1124 aa16.58■□□□□ 0.25
SFSWAP-210ENST00000541286 KRT222Q8N1A0 295 aa16.58■□□□□ 0.25
SFSWAP-210ENST00000541286 CHMP4CQ96CF2 233 aa16.58■□□□□ 0.25
SFSWAP-210ENST00000541286 CLSTN2Q9H4D0 955 aa16.58■□□□□ 0.25
SFSWAP-210ENST00000541286 U3KPZ7 1027 aaPredicted RBP16.58■□□□□ 0.25
SFSWAP-210ENST00000541286 IRS2Q9Y4H2 1338 aa16.58■□□□□ 0.25
SFSWAP-210ENST00000541286 SHTN1A0MZ66 631 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 SF3A1Q15459 793 aaKnown RBP16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 CCDC73Q6ZRK6 1079 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 MAGEB6Q8N7X4 407 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 OSBP2Q969R2 916 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 GPR108Q9NPR9 543 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 ZBTB12Q9Y330 459 aaPredicted RBP16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 SMTNL1A8MU46 457 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 M0R2C6 588 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 SCNN1DP51172 638 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 SDF4Q9BRK5 362 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 ZC3H12CQ9C0D7 883 aaKnown RBP16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 CD209Q9NNX6 404 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 LRP2BPQ9P2M1 347 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 DUOX1Q9NRD9 1551 aa16.58■□□□□ 0.24
SFSWAP-210ENST00000541286 SLURP2P0DP57 97 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 ZRSR1Q15695 479 aaKnown RBP16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 ISM2Q6H9L7 571 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 LRRN4CLQ8ND94 238 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 ANKRD2Q9GZV1 360 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 RAI14Q9P0K7 980 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 COL4A5P29400 1685 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 CENPFP49454 3210 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 KINO60870 393 aaKnown RBP16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 DALRD3Q5D0E6 543 aaKnown RBP16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 FBXO33Q7Z6M2 555 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 CNKSR1Q969H4 720 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 FBXO3Q9UK99 471 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 CFAP45Q9UL16 551 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 MED23Q9ULK4 1368 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 G3V3G9 751 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 BIN1O00499 593 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 PPIP5K2O43314 1243 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 YBX3P16989 372 aaKnown RBP eCLIP16.57■□□□□ 0.243e-8■■□□□ 11.6
SFSWAP-210ENST00000541286 ZNF75DP51815 510 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 DCAF8Q5TAQ9 597 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 STYK1Q6J9G0 422 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 C11orf57Q6ZUT1 292 aaPredicted RBP16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 USP28Q96RU2 1077 aa16.57■□□□□ 0.24
SFSWAP-210ENST00000541286 A0A1B0GUL6 1792 aa16.56■□□□□ 0.24
SFSWAP-210ENST00000541286 PRKAB2O43741 272 aa16.56■□□□□ 0.24
SFSWAP-210ENST00000541286 GJB4Q9NTQ9 266 aa16.56■□□□□ 0.24
SFSWAP-210ENST00000541286 DYNLL1P63167 89 aaKnown RBP16.56■□□□□ 0.24
SFSWAP-210ENST00000541286 RESTQ13127 1097 aa16.56■□□□□ 0.24
SFSWAP-210ENST00000541286 FSIP1Q8NA03 581 aa16.56■□□□□ 0.24
SFSWAP-210ENST00000541286 YDJCA8MPS7 323 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 NFKBIEO00221 500 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 CERS5Q8N5B7 392 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 NEK11Q8NG66 645 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 QSER1Q2KHR3 1735 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 ARID4AP29374 1257 aaPredicted RBP16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 HNRNPH2P55795 449 aaKnown RBP16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 GABPB1Q06547 395 aaPredicted RBP16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 ERCC6LQ2NKX8 1250 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 TAF3Q5VWG9 929 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 KBTBD3Q8NAB2 608 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 INCENPQ9NQS7 918 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 ZNF532Q9HCE3 1301 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 CCDC66A2RUB6 948 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 TPM3P06753 285 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 DHX32Q7L7V1 743 aaKnown RBP16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 KIAA0825Q8IV33 1275 aa16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 MORC2Q9Y6X9 1032 aaPredicted RBP16.55■□□□□ 0.24
SFSWAP-210ENST00000541286 ELP1O95163 1332 aa16.54■□□□□ 0.24
SFSWAP-210ENST00000541286 A0A1B0GVL5 298 aa16.54■□□□□ 0.24
SFSWAP-210ENST00000541286 ARHGAP27Q6ZUM4 889 aa16.54■□□□□ 0.24
SFSWAP-210ENST00000541286 ZCCHC17Q9NP64 241 aaKnown RBP16.54■□□□□ 0.24
SFSWAP-210ENST00000541286 SCN9AQ15858 1988 aa16.54■□□□□ 0.24
SFSWAP-210ENST00000541286 CEP350Q5VT06 3117 aa16.54■□□□□ 0.24
SFSWAP-210ENST00000541286 HMGB2P26583 209 aaKnown RBP16.54■□□□□ 0.24
SFSWAP-210ENST00000541286 DENND2AQ9ULE3 1009 aa16.54■□□□□ 0.24
SFSWAP-210ENST00000541286 NSUN7Q8NE18 718 aaKnown RBP16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 TMX4Q9H1E5 349 aaPredicted RBP16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 GOLPH3LQ9H4A5 285 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 ARMT1Q9H993 441 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 PTPN14Q15678 1187 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 MFSD14BQ5SR56 506 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 EPC1Q9H2F5 836 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 MYH13Q9UKX3 1938 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 ECE2O60344 883 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 PDE6AP16499 860 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 CACNB3P54284 484 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 LARGE2Q8N3Y3 721 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 NKX2-3Q8TAU0 364 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 LEMD3Q9Y2U8 911 aa16.53■□□□□ 0.24
SFSWAP-210ENST00000541286 ATP2B4P23634 1241 aa16.52■□□□□ 0.24
SFSWAP-210ENST00000541286 SDR42E1Q8WUS8 393 aa16.52■□□□□ 0.24
SFSWAP-210ENST00000541286 NOL10Q9BSC4 688 aaKnown RBP16.52■□□□□ 0.24
SFSWAP-210ENST00000541286 ZNF446Q9NWS9 450 aa16.52■□□□□ 0.24
SFSWAP-210ENST00000541286 MAST3O60307 1309 aa16.52■□□□□ 0.23
SFSWAP-210ENST00000541286 E7EWF7 191 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms